FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29818
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAGAGTGAGACTTGAGATGGGATCAGACTTTATGTGCAATCTATG408213.689717620229391No Hit
CATAGAAAATAATGTGGCCGGGCATTGCTCTTGACATCTCTATGAGACCA23507.881145616741565No Hit
CATAGACACATGTAGGATGGGGTGGAGGATGATCAATGCTGCTTCTATGA19456.522905627473338No Hit
CATAGAGGGTGCTCCTGTGCTGGGTAGTGGTAGTCTATGAGACCAAGTCT18726.278087061506472No Hit
CATAGACTTCAGCCCTCACAAGCCTTACCTCAAATGCCAGGCTCTATGAG17515.872291904218928No Hit
CATAGACACATGTAGGATGGGGTGGCTGGGCATTGCTCTTGACATCTCTA12994.35642900261587No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGACTGTGTTAATTTAAAAGAACA11653.9070360185123083No Hit
CATAGAGGGTGCTCCTGTACTGGGTAGTGGTAGTCTATGAGACCAAGTCT9953.336910590918237No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTAGTCTATGAGACCAAGTCT8442.8305050640552687No Hit
CATAGAAAATAATGTGGCTGGGCATTGCTCTTGACATCTCTATGAGACCA7912.6527600778053526No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTACACTGACGACATG6452.1631229458716215No Hit
CATAGAGGTGTCCTTTCCCCACTTTACACTGACGACATGGTTCTACACAT6412.149708229928231No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC5891.9753169226641627No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGCTTCTATGTGGAGGATGAT3341.1201287812730565No Hit
CATAGAGCTATCTGGCAAAAACCCATCACACTGCCATCACAGTTCATTGT3171.0631162385136494No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGGATGATCAATGCTGCTTCTAT3011.00945737474009No Hit
CATAGACTGGTCTCGAACTCCCAACCACACTGCCATCACAGTTCATTGTA2730.9155543631363606No Hit
CATAGAAAATAATGTGGCCGGGCATGGGCATTGCTCTTGACATCTCTATG2620.8786638942920384No Hit
CATAGAGCAGACAAACTTGCAAAAGACTACACTGACGACATGGTTCTACA2620.8786638942920384No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTGGTATATTTTCTAAAGCCTGGG2320.7780535247166142No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGCTGGAGGATGATCAATGCT2130.7143336239855121No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAGACAGGATGCGCAGATGGTCT1990.6673821181836475No Hit
CATAGACACATGTAGGATGGGGTGGCTGCCATGATTGTAAGTTTCTTGAG1870.6271379703534777No Hit
CATAGATGAAAGACAAGCAGGGAAGCCATGGTTCCATGTGTGTGCGATGT1860.6237842913676303No Hit
CATAGACACATGTAGGATGGGGTGGTATATTTTCTAAAGCCTGGGATCTA1830.6137232544100878No Hit
CATAGACACATGTAGGATGGGGTGGCTGTCATGATTATCACCTTCTATGA1630.5466496746931383No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGCTGGGTAGTGGTAGTCT1490.4996981688912737No Hit
CATAGACACATGTAGGATGGGGTGGGCATTGCTCTTGACATCTCTATGAG1460.48963713193373126No Hit
CATAGATCATGGGACTTCAGCATGGGCATTGCTCTTGACATCTCTATGAG1360.45610034207525657No Hit
CATAGATGAAAGACAAGCAGGGAAGCCAGACAGGATGCGCAGATGGTCTA1230.41250251525923937No Hit
CATAGAACTGTTTAAGAGAAGTCAGCGATGTTCCATGTGTGTGCGATGTT1220.40914883627339194No Hit
CATAGAAAGTCTGGACCAAGTGCCTCACAGTTCATTGTATTCTCTATGAG1050.35213629351398484No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATAGGTCAAGGTGGGAGGATG1020.34207525655644244No Hit
CATAGACACATGTAGGATGGGGTGGCTCCTGTGCTGGGTAGTGGTAGTCT990.3320142195989No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGAGGATGA980.3286605406130525No Hit
CATAGATCCACAAAGACCAAGAGTGTCTCTGACTGTGTTAATTTAAAAGA950.3185995036555101No Hit
CATAGACACATGTAGGATGGGGTGGTTATGTAGACAGGGATTGATCTCTA930.3118921456838151No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGAGACAGCCGCTCACCTCTATGAG890.29847742974042524No Hit
CATAGAACCAAAAATGGCTAGGCATGGGCATTGCTCTTGACATCTCTATG870.29177007176873027No Hit
CATAGACTGGTCTCGAACTCCCAACCACCTATCTACCCCCGGTCTATGAG850.28506271379703535No Hit
CATAGAAGAGTGAGACTTGAGATGGGAGGATGAGGTCAAGGTGGGAGGAT820.27500167683949295No Hit
CATAGAACTCCATCATAAGTCAAAGAGCATTACCCTCAAACTATCCTCTT800.268294318867798No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATGATTGTAAGTTTCT750.2515259239385606No Hit
CATAGAGGGTTGGAGATGGGGAAAGGACACCTCTATGTGCCTTACCTCAA720.2414648869810182No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTACCGTAAGTTGCAATATAGA720.2414648869810182No Hit
CATAGAAAGTCTGGACCAAGTGCCTTACCTCAAATGCCAGGCTCTATGAG660.2213428130659333No Hit
CATAGATCCACAAAGACCAAGAGTGCCATGATTGTAAGTTTCTTGAGTCT660.2213428130659333No Hit
CATAGACTTCAGCCCTCACAAGCCTTACACTGACGACATGGTTCTACACA660.2213428130659333No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTATATTTTCTAAAGCCTGGGATC650.21798913408008586No Hit
CATAGATGAAAGACAAGCAGGGAAGCGACTTGGTCTCATAGAGTTTTGTT650.21798913408008586No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTTGCCAGCAAGGGAACAAAACTCT650.21798913408008586No Hit
CATAGAAAATAATGTGGCCGGGCATGGAGACAGCCGCTCACCTCTATGAG610.20457441813669597No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCGTCCCTATCCTCTTGCCTCCGTC600.20122073915084848No Hit
CATAGAGCATTACCCTCAAACTATCCCTACACTGACGACATGGTTCTACA590.19786706016500102No Hit
CATAGAACCAAAAATGGCTAGGCATGTTTTGTTCCCTTGGCTGTCATGAT560.1878060232074586No Hit
CATAGACTTCAGCCCTCACAAGCCTGCCATCACAGTTCATTGTATTCTCT500.16768394929237374No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGTTAAAATGCCATCACAG490.16433027030652625No Hit
CATAGAACTTCAATGCTGTGTTAAAATGCTGTGTTAAAATGCTGTGTTAA470.1576229123348313No Hit
CATAGAGGGTTGGAGATGGGGAAAGGCATGGTTCTACACATAGAGGGTTG460.15426923334898385No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAATGCCATCACAGTTCATTGTA450.15091555436313636No Hit
CATAGAGGGTTGGAGATGGGGAAAGGTGGAGGATGATCAATGCTGCTTCT410.13750083841974647No Hit
CATAGAAAGTCTGGACCAAGTGCCTCCTGTGCTGGGTAGTGGTAGTCTAT400.134147159433899No Hit
CATAGACACATGTAGGATGGGGTGGAGACAGCCGCTCACCTCTATGAGAC380.12743980146220402No Hit
CATAGAAAGTCTGGACCAAGTGTCTCTGACTGTGTTAATTTAAAAGAACA370.12408612247635656No Hit
CATAGAGGGTGCTCCTGTACTGGGTGGTTATGTAGACAGGGATTGATCTC350.11737876450466161No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTGGTCTGTTCGGCCA330.11067140653296666No Hit
CATAGAAAGTCTGGACCAAGTGCCTCTGCTACCGTAGGTCTGTTCGGCCA330.11067140653296666No Hit
CATAGATCCACAAAGACCAAGAGTGTCATGATTGTAAGTTTCTTGAGTCT320.10731772754711918No Hit
CATAGAACTCCATCATAAGTCAAAGAGCAAGAGTGCCATGATTGTAAGTT310.10396404856127173No Hit
CATAGAAGCATGGAAGACAAACAGCATGGGCATTGCTCTTGACATCTCTA300.10061036957542424No Hit
CATAGAGGTAAACAAAATAAGACATTACATAGGAGTCATAGATCCCAGAC300.10061036957542424No Hit
CATAGAGGGTGCTCCTGTACTGGGTGTGCTGGGTAGTGGTAGTCTATGAG300.10061036957542424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)