FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150565
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG5675637.695347524325044No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG68794.568790887656494No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG51303.4071663401188856No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA41732.771560455617175No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC39862.647361604622588No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA33662.2355793179025674No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA27241.809185401653771No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC26051.73014976920267No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG25931.7221797894597017No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC14620.9710091986849533No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG14420.9577258991133397No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG14040.932487629927274No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT11110.7378872912031349No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC8760.5818085212366751No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA8670.575831036429449No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA7720.5127353634642845No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT7130.47354962972802445No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA6580.43702055590608707No Hit
CATAGATCACCTACACAGACAGCTTTCCATGGGTCCTTTTCACATCATCT6440.42772224620595756No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTACACTGACGACATGGTTCTAC6160.40912562680569853No Hit
CATAGAACTTTGTGCCCCCAGTGTCTGTCAGAGATAGCACAGTGGATCTA6010.3991631521269884No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT5990.39783482216982696No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCGGCTAGTCCGTCACCCCTAA5750.38189486268389067No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA5730.38056653272672936No Hit
CATAGATCATGCAAAGAACACAGGCCATCTATGAGACGGGGGCAGATTAA5640.3745890479195032No Hit
CATAGAAGATGGTCTGCTACACTGGTGCCATGTCTTCTGTGTTTGGTCTA5550.3686115631122771No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA5430.36064158336930896No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGAGGGAAGGAAGGGCA5170.34337329392621124No Hit
CATAGACCCTTCTCCATGCCACATCATCCCATGGGTCCTTTTCACATCAT5010.3327466542689204No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGACGGAGTGAGGGCAGT4970.3300899943545977No Hit
CATAGAACTTTGTGCCCCCAGTGTCTACACTGACGACATGGTTCTACACA4740.31481419984724207No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCAGCATGTTGAGATGAATAAT4570.3035233952113705No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA4420.2935609205326603No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA4080.27097931126091723No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG3920.26035267160362635No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG3880.2576960116893036No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA3760.24972603194633544No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA3700.2457410420748514No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT3660.24308438216052866No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGTG3630.24109188722478667No Hit
CATAGAGGGGCATGCTGGATAAATCTATGAGACCAAGCCACACTCATGCA3620.24042772224620595No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG3500.2324577425032378No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTACAGTTTTTCCAAATATA3460.2298010825889151No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT3450.22913691761033442No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCGCCCAGGAAAGCAATCACCGCCA3430.22780858765317305No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAATATGGTG3180.21120446318865604No Hit
CATAGATCATGCAAAGAACACAGGCCATGGGTCCTTTTCACATCATCTAT3130.20788363829575265No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC3100.20589114336001063No Hit
CATAGATCATGCAAAGAACACAGGCCTTTCAGCATCTCTTTGGCTCTATG3060.20323448344568792No Hit
CATAGAAGATGGTCTGCTACACTGGTGGTTCCACACTCATGCAAAGCTGG2990.19858532859562314No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC2950.19592866868130043No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2920.19393617374555838No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT2780.1846378640454289No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGAGGGAAGGAAGGGCAAACTCTA2780.1846378640454289No Hit
CATAGATCTAGTACTGTAATTGTAGTGTGCAGACCATAGCATGTTGAGAT2760.18330953408826753No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2730.1813170391525255No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGGAGGGAAGGA2610.17334705940955733No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGTCTCCAATGCAGTTAGGACTA2600.17268289443097665No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA2570.1706903994952346No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG2510.16670540962375055No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT2500.16604124464516984No Hit
CATAGAGCTTCTGATCACTTTCGCCCATGGGTCCTTTTCACATCATCTAT2430.1613920897951051No Hit
CATAGATGTGGCTATGCAGACTGAGTGCAGCTATATTGGAGGAAAAGTCT2360.15674293494504035No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2310.15342211005213696No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG2240.1487729552020722No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG2210.14678046026633015No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG2100.13947464550194266No Hit
CATAGATCATGGGACTTCAGCATGGCCATGGGTCCTTTTCACATCATCTA2090.138810480523362No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC2040.13548965563045862No Hit
CATTCACCAAGTCACCCAGCCTCTATGAGACCAAGTCTCTGCTACCGTAA1930.12818384086607112No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1860.12353468601600638No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1850.1228705210374257No Hit
CATAGAAGATCCCATAGCAGCTTTGCCAAATATAAGATCCCATAGCAGTT1760.11689303623019957No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1750.1162288712516189No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGAGGGAA1740.11556470627303822No Hit
CATAGAAGGAGGGGAAACTGAGGCCATGGGTCCTTTTCACATCATCTATG1730.11490054129445755No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT1720.11423637631587685No Hit
CATAGAAGATGGTCTGCTACACTGGTGACATAGTTTTTCCAAATATAAGA1710.11357221133729618No Hit
CATAGATGTGGCTATGCAGACTGAGTGGGGGCAGATTAACAGGTCATCTA1680.11157971640155413No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCAAGA1680.11157971640155413No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1670.11091555142297346No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCGGTGGTTTACACCTGTAAT1560.10360973665858599No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1540.10228140670142463No Hit
CATAGATGTGGCTATGCAGACTGAGTGTGGCTAGTCCGTCACCCCTAATC1540.10228140670142463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)