FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39254
Sequences flagged as poor quality0
Sequence length150
%GC36

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT31297.971162174555459No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT27487.000560452437968No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT23135.892393131910124No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA22045.614714424007745No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA21785.548479135884241No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA20545.232587761756764No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA17534.465786926173129No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT17484.453049370764763No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG12843.2710042288683954No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG10882.7716920568604477No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT5711.4546288276354002No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG5141.3094206959800274No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC5051.2864930962449685No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG4821.2279003413664848No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTTCAGGTGCACACCAC4661.1871401640597137No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG3730.9502216334641055No Hit
CATAGAATCCTTTCCCCATTGCTTGTACACTGAATGAGAGTCCCTGTTGC3590.9145564783206807No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT3330.8483211901971774No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAGCAGGAATTAGACTCTTGACA3180.8101085239720793No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA3130.7973709685637133No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT3030.7718958577469812No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA2490.6343302593366281No Hit
CATAGAGTTCAAATGGCCAATCAGGTCGTCAGTGTACTGGGGACTGTGAC2190.557904926886432No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT2150.5477148825597391No Hit
CATAGAATCCTTTCCCCATTGCTTGTAGAGCAGGAATTAGACTCTTGACA1890.4814795944362358No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGATGCACGTGAC1890.4814795944362358No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC1880.4789320833545626No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT1880.4789320833545626No Hit
CATAGACTGTCATTGCTTGCCCATTGGAAGTTAGGAAGCCAGCTCTATGT1830.46619452794619654No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1780.45345697253783057No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1780.45345697253783057No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA1760.4483619503744841No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATAAATTCAACAGGCTTT1720.43817190604779127No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGGAA1610.41014928414938606No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC1550.39486421765934676No Hit
CATAGACATGCTAACATTTCTGGGGATACATTACTGGGGACTGTGACTCT1380.3515565292709023No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG1350.34391399602588274No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA1340.3413664849442095No Hit
CATAGAAGCAGGATGAAAACATGGTACAGTGTGCTCATTATTATTGGATG1310.3337239516991899No Hit
CATAGAGCAGGAATTAGACTCTTGACATCTATGTGTAGAACCATGTCGTC1300.33117644061751667No Hit
CATAGACCAGACTTTTGAAAGAAGCACATACGGTAGCAGAGACTGGGGAC1230.31334386304580425No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1210.30824884088245785No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA1150.2929637743924186No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA1120.285321241147399No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACCAACTCAGATGGGATCCTCT1110.28277373006572576No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC1070.27258368573903297No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT1040.26494115249401334No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT990.2522035970856473No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT970.24710857492230093No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT960.2445610638406277No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA950.24201355275895448No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT950.24201355275895448No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT920.23437101951393488No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAC910.23182350843226168No Hit
CATAGACTGTCATTGCTTGCCCATTGTTATTGGAAGTTAGGAAGCCAGCT790.20125337545218322No Hit
CATAGACTGTCATTGCTTGCCCATTGACTGTCATTGCTTGCTCATTATTA780.19870586437051No Hit
CATAGACATGCTAACATTTCTGGGGATAGGATTCTATGAGACCAACTCAG760.1936108422071636No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA730.18596830896214397No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGACTACAGGTGTGCACCAC720.18342079788047078No Hit
CATAGACTGTCATTGCTTGCCCATTGTTATTGAATGAGAGTCCCTGTTGC720.18342079788047078No Hit
CATAGATATGCCCATGGTTAGGAAGGCTGGCAAAGTTCCAATCTATGTGT690.17577826463545115No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGATGGGATTACAGGCACGCACCAC640.16304070922708513No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGTCTGTGACAGCTTGTATACAT610.1553981759820655No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA610.1553981759820655No Hit
CATAGAGTTCAAATGGCCAATCAGGTGACTTGGTCTCATAGAGTTCAAAT560.1426606205736995No Hit
CATAGAGTTCAAATGGCCAATCAGGTGTAGCAGAGACTTGGTCTCATAAA530.1350180873286799No Hit
CATAGACATGCTAACATTTCTGGGGATAGTAGCAGAGACTTGGTCTCATA520.13247057624700667No Hit
CATAGAGTTCAAATGGCCAATCAGGTCACGACGACATGGTCTCATAAATT510.12992306516533347No Hit
CATAGATGGAGAGAGTGAGGGAAAGGCTGGCAAAGTTCCAATCTATGTGT470.11973302083864065No Hit
CATAGAATAGCCAGCAGAAGGGAGCAGGAATTAGACTCTTGACATCTATG460.11718550975696744No Hit
CATAGAGGTGAGCGGCTGTCTCCACATCACTTATACGCCTCCCTGTCTAT460.11718550975696744No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGGAAGTACACAAAAAGGG460.11718550975696744No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGCTCTATTGGAAGTTAGGAAGCCA430.10954297651194782No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA420.10699546543027462No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAAACTGGACAATGAGAG420.10699546543027462No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGTTTACAGTCATGCTCCAC400.10190044326692821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)