FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31707
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1375343.37527990664522No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG11803.721575677295234No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT11503.6269593465165424No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG6552.0657898886681174No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG5111.6116315009303939No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC4931.5548617024631786No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA4071.2836282208975935No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3701.1669347462705397No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT2760.8704702431639701No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG2510.791623300848393No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT2480.7821616677705239No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT2450.7727000346926546No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT2100.6623143154508468No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG1960.6181600277541237No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAATGCAGTGGTGCAATCTCAGC1960.6181600277541237No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT1580.49831267543444663No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG1520.47938940927870816No Hit
CATAGATAGCAGCAATCTCAGGCCTCCAAACTTGGACTGAAATCTGTACC1500.47308165389346196No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA1380.4352351215819851No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG1370.432081243889362No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA1290.4068502223483773No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCATGATCTCAGC1170.36900369003690037No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT1140.35954205695903113No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAACCTGTGTATATT1120.353234301573785No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC990.3122338915696849No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA990.3122338915696849No Hit
CATAGATGGTAAGATGACATAGTGAAGAGTCGTCAGTGTGTGCCATACCA960.3027722584918157No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCTCAAACTCGGC940.2964645031065695No Hit
CATAGAACAATCAGGCACCCACCATGGAGACTTGGTCTCATAGAGAAGCT910.2870028700287003No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA910.2870028700287003No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA890.28069511464345415No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA870.27438735925820795No Hit
CATAGACAAGCCTGCCAAGACCTCTCCTCATAGAGAAGCTTTGAGATTTG870.27438735925820795No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC840.26492572618033877No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA820.2586179707950926No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGTAGTATGCAGTCTGTGA800.25231021540984644No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAAACATTTTCTGGTCAGCTGT770.24284858233197715No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTTA760.23969470463935408No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT750.23654082694673098No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG730.23023307156148487No Hit
CATAGACTCACTCTGTCACCCAAGCTACACTGAAACATTTTCTGGTCAGC730.23023307156148487No Hit
CATAGAGATCTTCTCGGCTTAGCGGCCATTGTCGCCTTCTCTTCTCTATG720.22707919386886177No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT700.2207714384836156No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA680.21446368309836944No Hit
CATAGATCCCTGGCAAGAATTCCTCAACACTGAAACATTTTCTGGTCAGC670.21130980540574637No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG630.19869429463525404No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA630.19869429463525404No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGGAGGCTGAAACTC590.18607878386476173No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA590.18607878386476173No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACTATGGCTTAATG580.18292490617213863No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA570.17977102847951557No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGACCAAAAGCACA530.16715551770902323No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA520.16400164001640016No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCATTGTCGCCTTCTCTTCTCTAT500.15769388463115402No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA490.15454000693853093No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC490.15454000693853093No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTCTGCGACATGGTTCCCCAATAT460.1450783738606617No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA460.1450783738606617No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA440.13877061847541552No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG420.13246286309016939No Hit
CATAGATCTCAAACAGCCTCTCCCAGCCCAGGGTTCCCTCCCACGTGAGC410.1293089853975463No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA390.12300123001230012No Hit
CATAGAGATCTTCTCGGCTTAGCGGCTGTCTCCACAAGTCCGCGCAGAGC390.12300123001230012No Hit
CATAGATCAAGGTGTGAGCATGGTCCTCCGATGCTTATTACATTGTTCTA390.12300123001230012No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA390.12300123001230012No Hit
CATAGAACAATCAGGCACCCACCATGTGACACCGAAAAACACCCTCTATG380.11984735231967704No Hit
CATAGATCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATTCTT380.11984735231967704No Hit
CATAGAGCCATCATCATTTCTCACCCAGCATAGAAGCTTTGAGATTTGTG350.1103857192418078No Hit
CATAGAGGTGAGCGGCTGCCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA350.1103857192418078No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCACAGAGCCTTCAGGTCA350.1103857192418078No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGCAGGAAAGTTGGAAC340.10723184154918472No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACACACACACACACACATTTA340.10723184154918472No Hit
CATAGATCCCTGGCAAGAATTCCTCAATATGAACAGAAAGAAGCTCTATG330.10407796385656164No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCTGCGCAGAGCCTTCAGGTCA320.10092408616393857No Hit
CATAGATCCAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCATT320.10092408616393857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)