FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19375
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA918547.406451612903226No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT5873.029677419354839No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG4942.5496774193548384No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG4072.1006451612903225No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCGTGCTCTTGGC3871.9974193548387098No Hit
CATAGAGGCGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2811.4503225806451614No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA2311.1922580645161291No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG2001.032258064516129No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG1310.6761290322580645No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT1240.64No Hit
CATAGACTCACTCTGTCACCCAAGCTGAAGTGCAATGGCACAAACATGAC1120.5780645161290322No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT990.5109677419354839No Hit
CATAGACTCACTCTGTCACCCAAGCTGGATTGCAGTGGCGCGATCTCTGC890.4593548387096774No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAGTGTAGAAGCTTTGAGATTT850.43870967741935485No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA830.42838709677419357No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC820.42322580645161295No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT770.3974193548387097No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG760.392258064516129No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA680.35096774193548386No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG670.34580645161290324No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA630.3251612903225806No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT610.31483870967741934No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCATGTCGTCAGTGCAGGAAAG600.3096774193548387No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT560.2890322580645161No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCTTTCAGGTCA540.2787096774193548No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA540.2787096774193548No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG520.26838709677419353No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCTAAGTTAGTGCCATACCAAGAAT510.2632258064516129No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT500.25806451612903225No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA480.247741935483871No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA470.24258064516129033No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGAGGTTTCCTGGGCATCAA440.2270967741935484No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT440.2270967741935484No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA430.22193548387096773No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA390.20129032258064516No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG390.20129032258064516No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA380.1961290322580645No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG370.19096774193548385No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGCCATACCAAGAATAAGAA360.18580645161290324No Hit
CATAGACTCACTCTGTCACCCAAGCTGGGCGTGGTGGCTCATGCCTGGAA360.18580645161290324No Hit
CATAGAGATCTTCTCGGCTTAGCGGCCATTGTCGCCTTCTCTTCTCTATG340.17548387096774193No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGCCCGCGCAGAGCCTTCAGGTCA330.17032258064516131No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGCAGGAAAGTTGGAAC330.17032258064516131No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGTGCAGAGCCTTCAGGTCA330.17032258064516131No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT330.17032258064516131No Hit
CATAGAACAATCAGGCACCCACCATGTACGGTAGCAGAAACTTGGTCTCA320.16516129032258065No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA310.16No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACACACACAGGAAAGTTGGAA300.15483870967741936No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG300.15483870967741936No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA290.14967741935483872No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA290.14967741935483872No Hit
CATAGATCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATCCTT290.14967741935483872No Hit
CATAGAGGTGAGCGGCTGTCCCCACAAGTCCGCGCAGAGCCTTCAGGTCA280.14451612903225805No Hit
CGTAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA280.14451612903225805No Hit
CATAGATCCAGCTTCATCCATGTCCCTGCAAAGGAGGTCCCCTCCCACGC270.1393548387096774No Hit
CATAGAGGTGAGCGGCTGCCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA260.13419354838709677No Hit
CATAGATGCCAAGAAGAGAAAAGCAGGGTAATTCTGGCCTTGTTCTATGT260.13419354838709677No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC240.1238709677419355No Hit
CATAGAGGAAAGAACAACTGCGGACGGGAGGAAGGAACAACTCTGGACTG230.11870967741935484No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA230.11870967741935484No Hit
CATAGACACAACGTTTGAGACTGCCTGGGCACGTTTGAGGTTTCCTGGGC230.11870967741935484No Hit
CATAGATCTCAAACAGCCTCTCCCAGAAGCTTTGAGATTTGTGTCTGTTC230.11870967741935484No Hit
CATAGAGGGCTATCCTTGCTCAGATCATACCAAAAGCACAAGGGAGAATC230.11870967741935484No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCT220.1135483870967742No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGCGCCTTCAGGTCA220.1135483870967742No Hit
CATAGACACAACGTTTGAGACTGCCTAGATTCTCCTCCGATGCTTATTAC220.1135483870967742No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGGTAATTCTGGCCTTGTTCTATG220.1135483870967742No Hit
CATAGACGGGAAGAGTAAGACCACCCCATGGTGCCATACCAAGAATAAGA220.1135483870967742No Hit
CATAGATGTTGTTGTTCTGTTGCCCAAGTCACCAAAAGCACAAGGGAGAA210.10838709677419354No Hit
CATAGATCTAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT210.10838709677419354No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGTCTTCAGGTCA200.1032258064516129No Hit
GATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA200.1032258064516129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)