FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005807999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005807999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19214
Sequences flagged as poor quality0
Sequence length150
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA13937.249921931924638No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA13857.208285625065057No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT12316.406786718018112No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT9084.7257208285625065No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA8044.184448839387946No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG7673.9918809201623815No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG7293.7941084625793695No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATAAATTCAACAGGCTTTCATCTA5152.6803372540855626No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT4322.248360570417404No Hit
CATAGAATCCTTTCCCCATTGCTTGTCAGTGTGGAAGTACACAAAAAGGG4122.14426980326845No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA3992.07661080462163No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG3872.0141563443322577No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC3741.9464973456854378No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCAGATGATATGAACCCAA3611.8788383470386176No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATAAATTCAACAGGCTTT3301.717497657957739No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA2711.4104298948683252No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT2411.2542937441448945No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA2251.1710211304257312No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC2031.0565212865618818No Hit
CATAGAATCCTTTCCCCATTGCTTGTATACATCTATGTGTAGAACCATGT1951.0148849797023005No Hit
CATAGAAGCAGGATGAAAACATGGTACACAAAAAGGGCATCTATGTGTAG1770.9212032892682419No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGTCTGTGACAGCTTGTATACAT1580.8223170604767358No Hit
CATAGACATGCTAACATTTCTGGGGATAGCAGAGACTTGGTCTCATAGAC1460.7598626001873634No Hit
CATAGACATGCTAACATTTCTGGGGATACTAACATTACTGGGGACTGTGA1300.6765899864682002No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1230.6401582179660664No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT1190.6193400645362757No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA1190.6193400645362757No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAATAGAGCAGGAATTAGACTCT1070.5568856042469034No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA1040.5412719891745602No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA980.510044759029874No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT970.5048402206724263No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT920.47881752888518786No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT920.47881752888518786No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTGGGGACTGTGACTCTG870.45279483709794943No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA840.43718122202560633No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT740.3851358384511294No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGACCAGATGATATGAAC730.3799313000936817No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTATGTGTTGGAAGTTAGG670.34870406994899555No Hit
CATAGACTGTCATTGCTTGCCCATTGTCATTGCTTGCTCATTATTATTGG630.32788591651920473No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACAAGTGCTCATTA590.30706776308941397No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAGTGTCATCACTTATACG590.30706776308941397No Hit
CATAGATTGCATAGCCATGTGTAGCCAAACTGGACAATGAGAGGATCTAT590.30706776308941397No Hit
CATAGATATGCCCATGGTTAGGAAGGCCTTTCTATGAGACCAACTCAGAT580.3018632247319663No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA570.2966586863745186No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC540.2810450713021755No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGT520.2706359945872801No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG500.2602269178723847No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTCACCCTGCTTATCAAACA490.255022379514937No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA470.24461330280004162No Hit
CATAGAATCCTTTCCCCATTGCTTGTCAAACATCTCTATGTGTAGAACCA470.24461330280004162No Hit
CATAGACCCACTTTCGTGACTTTGTGAACTTTGCCCCAAAAGAGGTTCTA460.23940876444259393No Hit
CATAGATGGAGAGAGTGAGGGAAAGGGTTCTACACATAGATTGGAACTTT460.23940876444259393No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTTGGAAGTTAGGAAGCCAG440.22899968772769858No Hit
CATAGACATGCTAACATTTCTGGGGATCTCATAGACATGCTAACATTACT440.22899968772769858No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAACCCCTTAAGAAAATTTAATTGT430.22379514937025088No Hit
CATAGACTGTCATTGCTTGCCCATTGCTGTCATTGCTTGCTCATTATTAT420.21859061101280317No Hit
CATAGAATCCTTTCCCCATTGCTTGTCTGTGACAGCTTCCACATGATGGA410.21338607265535547No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTGTTGTCTGTGACAGCTTG410.21338607265535547No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTAGAACCATGTCGTCAGTGT400.20818153429790778No Hit
CATAGAATCCTTTCCCCATTGCTTGTCCATTGCTTGCTCATTATTATTGG370.1925679192255647No Hit
CATAGACATGCTAACATTTCTGGGGATAGTGACTGGGGACTGTGACTCTG350.1821588425106693No Hit
CATAGAATCCTTTCCCCATTGCTTGTCCATTCAACTTTCCTTGGCTCTAT340.1769543041532216No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTCTGTTTTCTATGTGTA340.1769543041532216No Hit
CATAGACTGTCATTGCTTGCCCATTGTTATTGGAAGTTAGGAAGCCAGCT340.1769543041532216No Hit
CATAGAATAGCCAGCAGAAGGAAGCACACAAAAAGGGCATCTATGTGTAG320.16654522743832623No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCATCACTTA310.1613406890808785No Hit
CATAGATATGCCCATGGTTAGGAAGGGCACATGGTTCTCACATGGTTCTC280.14572707400853543No Hit
CATAGACTGCCTCAGCCTCCTGAGTATGTGTAGAACCATGTCGTCAGTGG280.14572707400853543No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGGAA270.14052253565108774No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTGG270.14052253565108774No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT260.13531799729364005No Hit
CATAGACTGTCATTGCTTGCCCATTGTTATTGGATGGGATGCTCATTATT250.13011345893619236No Hit
CATAGACTGTCATTGCTTGCCCATTGGACTGTCATTGCTTGCTCATTATT250.13011345893619236No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGCTTCCACATGATGGACATCTATG230.11970438222129696No Hit
CATAGAGCAGAAAACCTTTGAATAACAGCTTCCACATGATGGACATCTAT210.10929530550640158No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGCTCATTATTATTGGATGGGATC210.10929530550640158No Hit
CATAGAGCAGGAATTAGACTCTTGACATCTATGTGTAGAACCATGTCGTC210.10929530550640158No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA200.10409076714895389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)