FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24589
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT17056.9339948757574525No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA14365.840009760461995No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA13885.644800520557973No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT10614.3149375737118225No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG8893.615437797389076No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT5702.318109723860263No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA5662.3018422872015942No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT5292.1513684981089103No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG4521.8382203424295418No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA4361.7731505957948677No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC3941.6023425108788483No Hit
CATAGATCATGGGACTTCAGCATGGAGACAGCCGCTCACCTCTATGAGAC3491.4193338484688276No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG3291.3379966651754849No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTACACTGACGACATGGTTCTACA3151.2810606368701452No Hit
CATAGATTGGAACTTTGCCAGCCTTATACGGTTGCACAGATCATTTAAGC2851.1590548619301315No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA2481.0085810728374476No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCTTGATCTATCCAGGAATTT2390.9719793403554435No Hit
CATAGACAGGGAGGCGTATAAGTGATGTACCAATAACACAAAGTCACGAA2350.955711903696775No Hit
CATAGATTCTGAAGAAATCAGATAGAGAGAAACTACGGTTGCACAGATCA2130.8662410020740983No Hit
CATAGATGCCCTTTTTGTGTACTTCCACTGACGACATGGTTCTACACATA2100.8540404245800968No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACGACATGCTTCCTTCT2100.8540404245800968No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT1980.8052381146040912No Hit
CATAGACACCATGCCTGGCTAATTTTCCTTTTTGTGTGCTTCTTTCAAAA1950.7930375371100898No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATTCTGTTATTCAAAGGTTT1830.7442352271340843No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGTATC1820.7401683679694172No Hit
CATAGAGAGATTTTGGGCTGAGACGAGTCCAATGGGCAAGCAATGACAGT1740.7076334946520801No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGTACGGTTGCACAGATCATTT1710.6954329171580789No Hit
CATAGAGAGATTTTGGGCTGAGACGACATAGAGCAGAATTACCTCTGGAT1650.6710317621700761No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA1650.6710317621700761No Hit
CATAGAGAGATTTTGGGCTGAGACGACACTGACTGATACAGGAAGGCCTT1560.6344300296880719No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGACTGATACAGGAAGGCCTTTC1510.6140957338647363No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG1490.6059620155354021No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1320.5368254097360609No Hit
CATAGATCATGGGACTTCAGCATGGCTATGGTGTTGATTGTGTTATTGGT1240.5042905364187238No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTATACGTGAATGTGGATCAGAA1110.45142136727805116No Hit
CATAGACAGAAACCACCCAGACAACCTGATTGGCCATTTGAACTCTATGA1100.44735450811338406No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATATCCCCAGAAATGTTAGCA1090.4432876489487169No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGGTTCTACACATAGATGCCCTT1070.4351539306193826No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC1070.4351539306193826No Hit
CATAGATCATGGGACTTCAGCATGGCTACACATGGCTATGCAATCTATGA1050.4270202122900484No Hit
CATAGAGAGATTTTGGGCTGAGACGAGATTTTGTGCTGGCTTGACTTTTC1040.42295335312538124No Hit
CATAGAGCTGGCTTCCTAACTTCCAACCATCCTTCCTAACCATGGGCATA1030.41888649396071415No Hit
CATAGAGCTGGCTTCCTAACTTCCAACAATGGGCAAGCAATGACAGTCTA970.3944853389727113No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATCCCCA940.38228476147871No Hit
CATAGAACCTCTTTTGGGGCAAAGTTCAAAATGGTCAAACAGGAGGTCTA930.37821790231404284No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGCCCTTTTTGTGTGCTTCTTTC920.37415104314937575No Hit
CATAGATCCCATCCAATAATAATGAGCACACTGACTGATACAGGAAGGCC920.37415104314937575No Hit
CNTAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA880.3578836064907072No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCAATCTGTGAGT810.32941559233803736No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGAGACCAAGTCTCTGCTA780.31721501484403597No Hit
CATAGACAGAAACCACCCAGACAACCTACACAAAGTCACGAAAGTGGGTC760.30908129651470173No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGTGCTGGCTTGACTTTTCATC720.2928138598560332No Hit
CNTAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT700.2846801415266989No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTATCCCCAGAAATGTTAGCATGT690.2806132823620318No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCACCTGATTGGC660.2684127048680304No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGTCTGTTATTCAAAGGTT660.2684127048680304No Hit
CATAGAGCTGGCTTCCTAACTTCCAAAGCCTTCCTAACCATGGGCATATC640.2602789865386962No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCAAGTCTCTGCTACCGTAT630.25621212737402904No Hit
CATAGATCATGGGACTTCAGCATGGCGGTTCTACACATAGATCATGGAGA590.2399446907153605No Hit
CNTAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA580.23587783155069342No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTACCATGTTTTCATCCTG550.22367725405669203No Hit
CATAGATGTATACAAGCTGTCACAGACAACAATGGGCAAGCAATGACAGT520.21147667656269062No Hit
CATACTCAGGAGGCTGAGGCAGTCTATGAGACCAAGTCTCTGCTACCGTA510.2074098173980235No Hit
CNTAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT510.2074098173980235No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTCATCTATGAGACCAAGTCATCT470.191142380739355No Hit
CATAGAGCTGGCTTCCTAACTTCCAACTGCCTTCCTAACCATGGGCATAT460.18707552157468788No Hit
CNTAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG440.1789418032453536No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGCTTCTTTCAAAAGTCTGGTCT410.16674122575135222No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAGTCAATGGGCAA410.16674122575135222No Hit
CATAGAGCCAAGGAAAGTTGAATGGACAAGCAATGGGGAAAGGATTCTAT410.16674122575135222No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTACGGTAGCAGAATTACCTCTGG400.1626743665866851No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGACAATGGGCAAGCAA400.1626743665866851No Hit
CATAGATCCCATCCAATAATAATGAGCACACTGTACCATGTTTTCATCCT390.15860750742201798No Hit
CATAGATGTCCATCATGTGGAAGCTGTCACAGACAAGCAATGGGGAAAGG370.15047378909268372No Hit
CATAGATCCCATCCAATAATAATGAGCACAAAGTCACGAAAGTGGGTCTA370.15047378909268372No Hit
CATAGATGCCCTTTTTGTGTACTTCCATGTGCTTCTTTCAAAAGTCTGGT350.14234007076334945No Hit
CNTAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT340.13827321159868233No Hit
CATAGAGCCAAGGAAAGTTGAATGGACATGGTTCTACACAAAGTCACGAA330.1342063524340152No Hit
CNTAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT320.1301394932693481No Hit
CATAGAAACCCCAAAGGCTATGTTCAACACTGACTGATACAGGAAGGCCT320.1301394932693481No Hit
CATAGAGCTGGCTTCCTAACTTCCAATAACAATGGGCAAGCAATGACAGT320.1301394932693481No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTCTATGAGACCAAGTCTGTTATT300.12200577494001381No Hit
CATAGAGAGATTTTGGGCTGAGACGAAGTCTCTGCTACCGTATGTGCTGG300.12200577494001381No Hit
CATAGATGCCCTTTTTGTGTGCTTCTTTCAAAAGTCTGGTCTATGAGACC290.11793891577534671No Hit
CNTAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA290.11793891577534671No Hit
CATAGAGCCAAGGAAAGTTGAATGGACACTGACGACATGGTTCTACACAT290.11793891577534671No Hit
CATAGAGCTGGCTTCCTAACTTCCAAACAATGGGCAAGCAATGACAGTCT280.11387205661067958No Hit
CATAGATTTGTAAATTGCCTAGTCTTGCACAGATCATTTAAGCTCAATCT270.10980519744601244No Hit
CATAGATCCCATCCAATAATAATGAGCACACATAGATCCCATCCAATAAC260.10573833828134531No Hit
CATAGATCCCATCCAATAATAATGAGCAATGGGCAAGCAATGACAGTCTA260.10573833828134531No Hit
CATAGAGCTGGCTTCCTAACTTCCAATGGTTCTACACATAGAGCTGCCTT260.10573833828134531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)