FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54195
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1449426.74416459082941No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA37576.932373835224652No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT19083.520619983393302No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT18133.3453270596918534No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA16443.0334901743703293No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT16232.9947412122889565No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA14812.7327244210720547No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA14722.7161177230371805No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG11262.0776824430297998No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG9421.7381677276501522No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT8171.5075191438324569No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG5931.0941968816311467No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG5010.924439523941323No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATACTGGGGACTGTGAC4740.8746194298367008No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA4740.8746194298367008No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT4520.8340252790847864No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCATGATTGT4430.8174185810499123No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4400.8118830150382876No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT4000.7380754682166252No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG3630.6698034874065872No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG3000.5535566011624689No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC2860.527723959774887No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT2670.49266537503459723No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC2530.4668327336470154No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT2400.44284528092997505No Hit
CATAGACCCACTTTCGTGACTTTGTGATGGTTCTGAACATAGCCTTTGGG2310.42623858289510097No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2260.4170126395423932No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC2060.380108866131562No Hit
CATAGATGACTTGGGGGAAAATGGTACTGGGGACTGTGACTCTGTTTTCT1940.3579666020850632No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA1930.35612141341452164No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA1900.35058584740289694No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1800.3321339606974813No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTACCAGATGATATGAACC1740.3210628286742319No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG1700.3136820739920657No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1650.3044561306393579No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG1540.2841590552634007No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC1370.25279084786419415No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1340.2472552818525694No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA1320.2435649045114863No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC1310.24171971584094473No Hit
CATAGAATCCTTTCCCCATTGCTTGTCTATGACCAGATGATATGAACCCA1270.23433896115877847No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1200.22142264046498752No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAGCAGGAATTAGACTCTTGACATC1180.21773226312390442No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATGCTCATTATTATTGGATGGGAT1170.21588707445336286No Hit
CATAGACATGCTAACATTACTGGGGACTGTGACTCTGTTTTCTATGTGTA1080.19928037641848878No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA940.1734477350309069No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA930.17160254636036534No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT920.16975735768982378No Hit
CATAGACATGCTAACATTTCTGGGGATAGAGACTTGGTCTCATAGACATG900.16606698034874065No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA880.16237660300765755No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA870.16053141433711596No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA840.1549958483254913No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA820.15130547098440816No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC780.1439247163022419No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC760.14023433896115878No Hit
CATAGAATCCTTTCCCCATTGCTTGTGTAGAACCATGTCGTCAGTGTCCA740.13654396162007565No Hit
CATAGACTGTCATTGCTTGCCCATTGACTGTCATTGCTTGCTCATTATTA740.13654396162007565No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA730.13469877294953408No Hit
CATAGACATGCTAACATTTCTGGGGATAGCAGAGACTTGGTCTCATAGAC730.13469877294953408No Hit
CATAGAGGTGAGCGGCTGTCTCCACGAGTCCGCGCAGAGCCTTCAGGTCA730.13469877294953408No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTGGAAGTTAGGAAGCCAGC700.12916320693790942No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGTTGGGAATTACAGGTGCATGCCA690.12731801826736783No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG680.1254728295968263No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC670.1236276409262847No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGACTACAGGCAAATGCCCC640.11809207491466002No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA630.11624688624411847No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC630.11624688624411847No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG630.11624688624411847No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA590.10886613156195221No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA550.10148537687978595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)