FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57553
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1172420.370788664361545No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA774013.448473580873282No Hit
CATAGACCCTGGATTAGCATGAGGAACATGGCTTCCCATTTCAGACAAGG36856.402793946449361No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT33825.876322693864785No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG16252.8234844404288224No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT15952.7713585738362903No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA11652.024221152676663No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT11491.9964206904939794No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA9501.6506524420968498No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG4740.8235886921620071No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4110.7141243723176898No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT3970.6897989679078415No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGGTTAAACAATATCCAAATCC3660.6359355724288916No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG3610.627247927996803No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA3550.6168227546782965No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT3400.5907598213820304No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG3370.5855472347227773No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC3210.5577467725400934No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG3030.5264712525845743No Hit
CATAGATGGAGAGAGTGAGGGAAAGGAAATTATGGGAGCCCTGTGAAACG2950.5125710214932323No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT2890.5021458481747259No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTATGTGTAGAACCATGTC2830.4917206748562195No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG2810.48824561708338404No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA2680.46565774155995343No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTAAGGCTGGCAAAGTTCCAA2560.44480739492294064No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC2500.4343822216044342No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACCCAAATGGACATTTCACTTATA2380.41353187496742133No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT2320.4031067016489149No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG2080.36140600837488923No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGGAAGT2040.3544558928292183No Hit
CATAGAATCCTTTCCCCATTGCTTGTGAATCCTTTCCCCATCACTTATAC1920.33360554619220545No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC1880.3266554306465345No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATACTGGGGACTGTGACTCTGTTT1840.31970531510086353No Hit
CATAGACCCTTACCAATAACACAATCAACACTGGGGACTGTGACTCTGTT1810.31449272844161036No Hit
CATAGATGGAGAGAGTGAGGGAAAGGACATCACTTATACGCCTCCCTGTC1760.30580508400952167No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG1690.2936423818045975No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATCACTTATACGCCTCCCTGTCTA1670.29016732403176204No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGTCCATTCAACTTTCCTTGGCT1550.2693169773947492No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC1520.26410439073549596No Hit
CATAGACATGCTAACATTTCTGGGGATATTACTGGGGACTGTGACTCTGT1420.24672910187131863No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT1370.23804145743922994No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1340.23282887077997672No Hit
CATAGAGTTCAAATGGCCAATCAGGTAACTTTGCCCCAAAAGAGGTTCTA1320.22935381300714122No Hit
CATAGACCCTGGATTAGCATGAGGAAAAGAGGAAGTCAAATTGTCCCTGT1260.21892863968863482No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA1210.21024099525654613No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1200.2085034663701284No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC1170.20329087971087517No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATCCAGATGATATGAACCCAAAGG1170.20329087971087517No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1160.20155335082445744No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAG1140.198078293051622No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA1080.18765311973311555No Hit
CATAGACTGTCATTGCTTGCCCATTGGGATTTAAAAAAAGGAAAAGAACA1070.18591559084669781No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA1070.18591559084669781No Hit
CATAGACATGCTAACATTTCTGGGGATAGACTTGGTCTCATAGACATGCT970.16854030198252046No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA910.15811512866401406No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT890.15464007089117857No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCACACTGAACATAGCCTTT890.15464007089117857No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG860.14942748423192534No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTCCAGATGATATGAACCCA860.14942748423192534No Hit
CATAGAATCCTTTCCCCATTGCTTGTCACATAGACCAACTCAGATGGGAT840.1459524264590899No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC770.13378972425416574No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACTCCACAT740.12857713759491252No Hit
CATAGATGAAAAGTCAAGCCAGCACAGTGAAACCCCATCTCTACTAAAAA730.12683960870849478No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTCTATGAGACCAACTCAGATGG730.12683960870849478No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGCTTGTCAAAGATCA720.12510207982207702No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT720.12510207982207702No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC710.12336455093565932No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGTGCCAC700.12162702204924157No Hit
CATAGACCAGACTTTTGAAAGAAGCACACTGGGGACTGTGACTCTGTTTT670.11641443538998836No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCATGATTGT670.11641443538998836No Hit
CATAGACATGCTAACATTTCTGGGGATCATAGACATGCTAACATTACTGG650.11293937761715288No Hit
CATAGATGCATCAGCAACTCACAGATTATGACATAAAATATGTGATAAAT630.10946431984431741No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG610.10598926207148193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)