FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46348
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG2196547.3914732027272No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG13562.9256925865193755No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA11382.4553378786571156No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA10302.222318115129024No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG9151.9741952187796667No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC6021.2988694226288082No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA5801.2514024337619747No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC5551.1974626736860274No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG5071.0938983343402089No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC4430.9558125485457841No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT4070.87813929403642No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA4050.8738241132303444No Hit
CATAGAGGTCGCAGCTACCCAGAAAGCATGGTTCTACACATAGAACTTGT3740.8069388107361698No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG3720.8026236299300941No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG2250.4854578406835246No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA1920.41425735738327435No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTACACTGACGACATGGTTCTAC1880.4056269957711228No Hit
CATAGATGTGCCTCTCCAACATTCATGTGTAGCATGTTGAGATGAATAAT1850.39915422456200916No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC1750.37757832053163026No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1700.36679036851644087No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC1550.3344265124708726No Hit
CATAGAACACAGATCTGCTTGGAGGTACACTGACGACATGGTTCTACACA1480.31932337964960733No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCAACGACATGGTTTTACACATAGAG1450.31285060844049367No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA1290.27832916199188745No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT1250.2696988003797359No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA1240.267541209976698No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG1230.26538361957366013No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA1210.26106843876758434No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTAGTTTTTCCAAATA1170.2524380771554328No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT1150.24812289634935702No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1140.24596530594631913No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT1110.23949253473720547No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCATGGGTCCTTTTCACATCAT1110.23949253473720547No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTAGTGCAGCTATATTGGAGG1100.23733494433416763No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1070.23086217312505397No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1060.22870458272201605No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA1020.2200742211098645No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA1010.2179166307068266No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCTACCGTAGACGGAGTGAGGGCAGT960.20712867869163717No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCCCTTTCAGCATCTCTTTGGC940.2028134978855614No Hit
CATAGATCATGCAAAGAACACAGGCCATAGAGGAGGGAAGGAAGGGCAAA930.20065590748252352No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT920.19849831707948562No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC920.19849831707948562No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG920.19849831707948562No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG900.19418313627340986No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG890.19202554587037196No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC880.1898679554673341No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG850.18339518425822043No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG830.17908000345214464No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCAGGAGGGAAGGAAGGGCA820.17692241304910677No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC800.17260723224303098No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGGGAGGGAAGGAAGGGC750.16181928022784153No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA710.15318891861569No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGGCTCATTTGGCCATCCCATTCC710.15318891861569No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTACG690.14887373780961421No Hit
CATAGATCATGGGACTTCAGCATGGCTAGTCCGTCACCCCTAATCTATGA640.1380857857944248No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA640.1380857857944248No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG640.1380857857944248No Hit
CATAGAGGGGCATGCTGGATAAATCTATTCACCAAGTCACCCAGCCTCTA620.133770604988349No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT610.13161301458531113No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT610.13161301458531113No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGTCCTGGC590.12729783377923534No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG570.12298265297315956No Hit
CATAGAGAGGTCGCCCAGGTATTTCTACACTGGAGACAGCCGCTCACCTC560.12082506257012168No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGTAGATTTGGACCTGCG550.11866747216708382No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA550.11866747216708382No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG550.11866747216708382No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTGGAGACAGCCGCTCACCTC490.10572192974885647No Hit
CATAGATGTGCCTCTCCAACATTCATTCCTCATTTCCCCTCTCTCTGAAT490.10572192974885647No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCA480.10356433934581859No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTATGCGGCGA480.10356433934581859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)