FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127125
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3159124.850344149459193No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA66655.242871189773845No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA51844.07787610619469No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT23431.8430678466076698No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC23071.814749262536873No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG21871.7203539823008849No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA21831.7172074729596853No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA21151.663716814159292No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA20751.632251720747296No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT18871.4843657817109144No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG18821.480432645034415No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT18551.4591937069813175No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT15011.1807276302851524No Hit
CATAGACTTCCTTGCCCCCATTTATTACACTGGGGACTGTGACTCTGTTT9130.7181907571288102No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT8440.663913470993117No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCAACCCCTTAAGAAAATTT8050.6332350049164209No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA7800.6135693215339233No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT7450.5860373647984267No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG7250.5703048180924287No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG6990.5498525073746313No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG6840.5380530973451327No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT6590.5183874139626352No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACACTGGGGACTGTGACTCTGTTT5100.4011799410029498No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC4710.3705014749262537No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG4590.36106194690265486No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTACATCACTTATACGCCT4570.35948869223205504No Hit
CATAGAATAGCCAGCAGAAGGAAGCAACATAGACCAACTCAGATGGGATC4410.34690265486725663No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4340.34139626352015734No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC4320.3398230088495575No Hit
CATAGAGGTGAGCGGCTGTCTCCAACCCCTTAAGAAAATTTAATTGTCTA4260.3351032448377581No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCATCACTTATACGCCTCCC4250.33431661750245817No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC3910.30757128810226153No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC3840.30206489675516224No Hit
CATAGAATAGCCAGCAGAAGGAAGCATCACTTATACGCCTCCCTGTCTAT3770.29655850540806294No Hit
CATAGAGCAGAAAACCTTTGAATAACAGAATAGAGCAGGAATTAGACTCT3690.2902654867256637No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT3590.2823992133726647No Hit
CATAGAGTTCAAATGGCCAATCAGGTATAGACCAACTCAGATGGGATCCT3460.27217305801376596No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAAATTAGCCAGGC3430.26981317600786625No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA3340.26273352999016714No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTCCCTAAAGCCCTTGTGAAG3290.25880039331366766No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA3290.25880039331366766No Hit
CATAGATGACTTGGGGGAAAATGGTACCGTAGCCATGCTGAAGTCCCATG3200.25172074729596855No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC3150.24778761061946902No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTCATCACTTATACGCCTCCCTGT3140.24700098328416914No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC2950.23205506391347097No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCAGTGTTGGAAGTACACAA2890.2273352999016716No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC2840.22340216322517206No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT2730.21474926253687315No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCAC2690.21160275319567357No Hit
CATAGAATCCTTTCCCCATTGCTTGTATAGCCATGCTGAAGTCCCATGAT2650.20845624385447395No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT2600.20452310717797442No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG2340.184070796460177No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTGTGTGCCAC2330.18328416912487708No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG2310.18171091445427728No Hit
CATAGAATCCTTTCCCCATTGCTTGTACGGGAGCAGGAATTAGACTCTTG2280.17935103244837758No Hit
CATAGAATCCTTTCCCCATTGCTTGTTACGGAGCAGGAATTAGACTCTTG2270.17856440511307767No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGGTTGTCTGGGTGGTTTCT2270.17856440511307767No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA2180.17148475909537858No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA2110.16597836774827926No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1980.15575221238938053No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTTAAGGCTGGCAAAGTTCCAATC1910.1502458210422812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCAC1910.1502458210422812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCAC1910.1502458210422812No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAC1900.14945919370698132No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA1850.1455260570304818No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCAC1840.14473942969518191No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCACACCAC1800.1415929203539823No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1710.13451327433628318No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1630.12822025565388395No Hit
CATAGACCATCCAGAGGTAATTCTGCTACCGTACAGCTTCCACATGATGG1610.12664700098328419No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA1520.11956735496558506No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGCGATTACAGGCGCCTGCCAC1510.11878072763028516No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTCCAGGTCA1490.11720747295968535No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1470.11563421828908556No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTATGCAAGACTAGGCAATTT1460.11484759095378565No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAC1430.11248770894788594No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCAC1400.11012782694198624No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1400.11012782694198624No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTTGGAAGTTAGGAAGCCA1360.10698131760078662No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCAC1350.10619469026548674No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC1310.10304818092428712No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCAC1310.10304818092428712No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC1310.10304818092428712No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1300.10226155358898721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)