FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114365
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2245019.630131596205132No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1177910.299479735933197No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG63545.555895597429283No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG53674.692869321907926No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC41543.632230140340139No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG36793.216893280286801No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT32542.845276089712762No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG31962.7945612731167753No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG30462.663402264678879No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT28822.5200017487867794No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT20931.8301053644034453No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG13961.2206531718620206No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT11661.0195426922572466No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT11130.9731998426091898No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC10750.9399728938049228No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA10460.9146154855069295No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC10440.9128666987277576No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT8740.7642198224981419No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG7380.6453023215144493No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG7260.6348096008394177No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA6960.6085777991518384No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT6740.589341144580947No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT6270.5482446552704061No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG5860.5123945262973811No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT5460.47741879071394216No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACTCTATGTGTAGAACCATG5450.4765443973243562No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA4980.43544790801381544No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACCCTGGGAGAAGAAA4940.43195033445547154No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC4920.43020154767629953No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG4860.42495518733878374No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA4810.42058322039085383No Hit
CATAGAAGAAGAGGGTGTGGGGAAGGTGGGTTGAGGGAGTCTTCTCTATG4690.4100904997158221No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACCATGGAGAGAATAATCCGTC4300.37598915752196915No Hit
CATAGACCAGTACGCCTTACCCCTTGGGCTGGTGTTTTCCTTGATCTATG4270.3733659773532112No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT4220.36899401040528135No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTTTACCTCTCAGTTAT4080.3567525029510777No Hit
CATAGACCAGTACGCCTTACCCCTTGTGAATGATGGGAGTGTCTGCTGGT3940.34451099549687403No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC3390.29641935906964545No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTATGGGCTGGTGTTTTCCTTGATC3370.2946705722904735No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATGATGGGAGTGTCTGCTGGT3050.26668998382372233No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT2900.25357408297993267No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG2810.2457045424736589No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT2780.243081362304901No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACTGTTAATATAGAAGAGACACA2760.24133257552572904No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTGTTACAAAAATTGGGAA2730.23870939535697108No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTCCTAAATGTCTTTGTCCTTCT2710.23696060857779916No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGGTGCGATGGCTTTCTGACT2610.2282166746819394No Hit
CATAGATCTAGCCCATCACTTCAGCATCCAGGCCCTTCAGCATCATTTCT2520.22034713417566562No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG2480.21684956061732175No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG2450.2142263804485638No Hit
CATAGATTCTTTCCTGGCTGTGGGTGCATAAAAACTGTCGGAGGTCTATG2400.20985441350063394No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTACAGTTGTGGAAAGTG2220.19411533248808638No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG2180.19061775892974248No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTAGCCCGTT2160.18886897215057055No Hit
CATAGACCCCATGACTCAGCTCCTCAATCCTGTGTTCATGGCTTCTATGT2080.18187382503388275No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA2030.17750185808595287No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG2000.17487867791719494No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCAGGCCCTTCAGCATCATTTCT1940.1696323175796791No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGCAGGCCCTTCAGC1870.16351156385257729No Hit
CATAGAACAACTTGCTCTAATACTTGGGAGAAGAAATGTTGGTCTATGTG1860.16263717046299128No Hit
CATAGAAGGAACAGCAGAGAGGGCAGATCCGGGGCATTTCCGAGGACTCT1680.14689808945044375No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGACCATGTC1670.1460236960608578No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTGTGGGCTGGTGTTTTCCTT1610.14077733572334192No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1520.13290779521706816No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG1490.13028461504831024No Hit
CATAGATCTCACCGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT1450.12678704148996633No Hit
CATAGATTCAGAGAAGGACAGCGTGGACACTGTCATTGTGGGTTTTAACT1390.1215406811524505No Hit
CATAGAACATTGATTCCTGGCATGTCCCAATGAACCCAGATGTCAGGTCC1380.12066628776286452No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGG1180.10317841997114503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)