FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156160
Sequences flagged as poor quality0
Sequence length150
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAAATCTGCAACAATATCATTCTCCTCTAACTTCATAGCACATCAT1922412.31045081967213No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAATTTGCAAATACAGAATCA1643610.525102459016393No Hit
CATAGATCACCCAGCCCATATTGCACATCTACAAGGACACTCATCTATGA99786.389600409836066No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACATTAGCTTAGTTAATTA75974.864882172131148No Hit
CATAGAGTCTGGAGGAAGGTGTCAGCCTCCAGACTCAACCCTTCTATGAG72834.663806352459017No Hit
CATAGAGGATCCCCTGACATTTTGGTTGCCTTTCCTCAGTTCTTTTTCTA72794.66124487704918No Hit
CATAGAATACAACACACTCTCTGCCCTGTTCACTCTGATGGTACTTCTAT71564.582479508196721No Hit
CATAGATCATGGGACTTCAGCATGGCTCACACCTATAATCCCATCTATGA60343.8639856557377046No Hit
CATAGAACAGTAAGTCAGCTCCTCCTTGGAGAGAAATGCTGCTCTATGAG29741.9044569672131146No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACAGCTAAAAATCTTGGAG28351.8154456967213115No Hit
CATAGAACAGTAAGTCAGCTCCTCCTCATAGAACATTAGCTTAGTTAATT26851.7193903688524592No Hit
CATAGAAGGAGCTGGACTGGATGGACTACAAGTACCCACCACCTCTATGA22581.445952868852459No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGTGCAGCAACAAAAGTCACTCCTCT20761.329405737704918No Hit
CATAGATCGGTAAGGAATTTGGCTAGAGGACACTTTGGACTCTGCCTCTA20001.2807377049180328No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGGTGGGGAAAGAGAGCACTCTATGA14860.9515881147540983No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGTGTCAGCCTCCAGACTCAACCCTT12870.8241547131147541No Hit
CATAGAAGTGACCCTCAGCTCAGTGAAACAAGATCGTGCCTCTATGAGAC11730.7511526639344263No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAAAAGCAAACTAACACAGAA10610.6794313524590163No Hit
CATAGACTCTGTTTTGCTACCTGGGGCTGAGAAAGGAGGATCACTCTATG10500.6723872950819672No Hit
CATAGATGTGCCACATACCTTTCCCAGGACACTTTGGACTCTGCCTCTAT9900.6339651639344263No Hit
CATAGAGGCAGGTGGGTGGTGGAGGGCTTTGCTGTTTCTATGAGACCAAG9740.6237192622950819No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAGCAAACTAACACAGAAACA9660.6185963114754098No Hit
CATAGATCACCCAGCCCATATTGCACAACTGGCATCTGGTGATCTATGAG9600.6147540983606558No Hit
CATAGATGCTTCTGATATGTTGCCGTTGCCTTTCCTCAGTTCTTTTTCTA9410.6025870901639344No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGCTTTGCTGTTTCTATGAGACCAAG8980.5750512295081966No Hit
CATAGACAGCTGGGGTGGGAGGTTAGGGTGGGGAAAGAGAGCACTCTATG8430.5398309426229508No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGACCAAAGCTAGAAACTCCCA8390.5372694672131147No Hit
CATAGATGCCTCAAAGAGCTGAAGACAGCCGCTCACCTCTATGAGACCAA7920.507172131147541No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGGTAATGGAGGAGTATGGGATCTAT7910.506531762295082No Hit
CATAGATGCTTCTGATATGTTGCCGTAGCAAACTAACACAGAAACAGAAA5820.37269467213114754No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGACACTTTGGACTCTGCCTCTATGA5720.3662909836065574No Hit
CATAGACCTGTGTGTGAGGCATTGTTGCAGGCTGAGAAAGGAGGATCACT5180.3317110655737705No Hit
CATAGAATACAACACACTCTCTGCCCTGCTGAGATTGGCCTGTGTCTATG5100.3265881147540984No Hit
CATAGAACTCTGCAACAATATCATTCTCCTCTAACTTCATAGCACATCAT4870.31185963114754095No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTATGGAGACAGCCGCTCACCTC4660.2984118852459017No Hit
CATAGACTCTGTTTTGCTACCTGGGGAGAGGAGGGGGCAGAATATCTATG4640.2971311475409836No Hit
CATAGAACAGTAAGTCAGCTCCTCCTGTTCACTCTGATGGTACTTCTATG4410.28240266393442626No Hit
CATAGATGCCTCAAAGAGCTGGAGACAGCCGCTCACCTCTATGAGACCAA4230.27087602459016397No Hit
CATAGAGCTTTAAGACCTGTCAGTGACCTGTTCACTCTGATGGTACTTCT4170.26703381147540983No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAAGCAAACTAACACAGAAAC3940.25230532786885246No Hit
CATAGACCCTCCTATCCCTTTTCCCCATAGAACATTAGCTTAGTTAATTA3670.235015368852459No Hit
CATAGAATACAACACACTCTCTGCCCTGCACATCTACAAGGACACTCATC3570.22861168032786888No Hit
CATAGACCAGCAGTTCTACTCCTAGATATACAAGGACACTTTGGACTCTG3520.2254098360655738No Hit
CATAGAACATCTACAGAACTCTCTACCCATACGGAGATAGAGAGGTTGGT3300.21132172131147542No Hit
CATAGAACAGTAAGTCAGCTCCTCCTCCTAATTAACTTAGCAACCTGTAC3120.1997950819672131No Hit
CATAGAGGCAGGTGGGTAGTGGAAGGACACATGTGTGAGAGGGAAGGACT3100.19851434426229508No Hit
CATAGACTCTGTTTTGCTACCTGGGGTGGGGAAAGAGAGCACTCTATGAG3030.19403176229508196No Hit
CATAGACTCTGTTTTGCTACCTGGGGTACGGAGATAGAGAGGTTGGTTCT2990.1914702868852459No Hit
CATAGATGCTTCTGATATGTTGCCGTACTCTCAGTTGTGTGTGTGGTCTA2870.1837858606557377No Hit
CATAGACAGCTGGGGTGGGAGGTTAGATGCCTCTTGTAGAAGGGATGGTC2730.17482069672131148No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTAGGCTGAGAAAGGAGGATCAC2720.17418032786885246No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACGCAAACTAACACAGAAA2670.17097848360655737No Hit
CATAGATCACCCAGCCCATATTGCACATCTACAAGGACACTTTGGACTCT2660.17033811475409838No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTAGATTTACTGACATGGGCAAT2640.16905737704918034No Hit
CATAGAGAACAGCCCTGAGAGAATGCCTCTTGTAGAAGGGATGGTCTATG2640.16905737704918034No Hit
CATAGAAGGAGCTGGACTGGATGGAGACAGCCGCTCACCTCTATGAGACC2630.1684170081967213No Hit
CATAGAACAGTAAGTCAGCTCCTCCTCTAACTTCATAGCACATCATGTCT2550.1632940573770492No Hit
CATAGATCGGTAAGGAATTTGGCTAGAGGGTAATGGAGGAGTATGGGATC2540.16265368852459017No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCCCTCATTATCCCTGTGCCT2490.15945184426229508No Hit
CATAGACTCTGTTTTGCTACCTGGGGTAATGGAGGAGTATGGGATCTATG2480.15881147540983606No Hit
CATAGATGATCCATCTACCTCTGCTTCAACACGGACTACAAGTACCCACC2440.15625No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCCATAGATGCTCAGATCTCA2430.15560963114754098No Hit
CATAGACCACCGTGCCCAGATAAGTTGCCTTTCCTCAGTTCTTTTTCTAT2420.15496926229508198No Hit
CATAGATCATGGGACTTCAGCATGGCTGAGAAAGGAGGATCACTCTATGA2360.15112704918032788No Hit
CATAGAGAACAGCCCTGAGAGAATGGAGACAGCCGCTCACCTCTATGAGA2320.1485655737704918No Hit
CATAGAGTCTGGAGGAAGGTGTCAGCCTCCAGACTCAATCCTTCTATGAG2240.14344262295081966No Hit
CATAGATGGAAATTTTTGGCCAGGTGCAAATTGTCAGTGTGTCTATGAGA2220.14216188524590165No Hit
CATAGAAATCTGCAACAATATCATTCTCCTCTCAGTTGTGTGTGTGGTCT2200.1408811475409836No Hit
CATAGAGAACAGCCCTGAGAGAATGCAGAGAACAGCTAAAAATCTTGGAG2140.13703893442622953No Hit
CATAGACTCTGTTTTGCTACCTGGGGTGGAGACAGCCGCTCACCTCTATG1980.12679303278688525No Hit
CATAGAACAGTCAAATCTCCGAGTAAACAGAACATTAGTTTAGTTAATTA1940.12423155737704918No Hit
CATAGAATACAACACACTCTCTGCCCTGTTCACTCTGACGGTACTTCTAT1910.12231045081967212No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTACACTGACGACATGGCTCAC1910.12231045081967212No Hit
CATAGAGAATCCCCTGACATTTTGGTTGCCTTTCCTCAGTTCTTTTTCTA1890.12102971311475409No Hit
CATAGACCCCATGTGCAGTGTAAGCTAGACATGTGTGAGAGGGAAGGACT1890.12102971311475409No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTAAGGGTGGGGAAAGAGAGCAC1860.11910860655737704No Hit
CATAGAACATCTACAGAACTCTCTACCCACCTGCCTCTTGTAGAAGGGAT1790.11462602459016394No Hit
CATAGATCATGGGACTTCAGCATGGCTCACACCTATAACCCCATCTATGA1760.1127049180327869No Hit
CATAGATCACTTGACTACAGAAAAAGGTCTGCTGAGATTGGCCTGTGTCT1710.1095030737704918No Hit
CATAGATGCCTCAAAGAGCTGAAGACAGTGTGCCTCTTGTAGAAGGGATG1670.10694159836065573No Hit
CATAGATGCCTCAAAGAGCTGAAGACAGTGTAGGGTAATGGAGGAGTATG1660.10630122950819672No Hit
CATAGAGCCTCCACTCTTCTCGCTATCGTAAGGACACTTTGGACTCTGCC1640.10502049180327869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)