FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212950
Sequences flagged as poor quality0
Sequence length150
%GC40

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG4364120.493543085231273No Hit
CATAGAGAATTTGCACACCACGGGACATGGATGAAGCTGGATCTATGAGA149927.0401502700164365No Hit
CATAGATGTCTCCCAGGCTAGAGTGAGCCCTTGTCCCTTTCTATGAGACC106264.989903733270721No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAATCAGGGTTGGTTCTATGAGACC83843.9370744306175163No Hit
CATAGATCATGGGACTTCAGCATGGTGGGTGCCTGATTGTTCTATGAGAC64093.0096266729279177No Hit
CATAGACCTTCCTGTTGGCCACACAGAATTAGCGGAGAGTGAGAACTCTA60402.836346560225405No Hit
CATAGAGCTTCTTTCTGTTCATATTGGGCAACAGAACAACAACATCTATG53512.5127964310871094No Hit
CATAGAGCTTCTTTCTGTTCATATTGGGGAACAGAACAACAACATCTATG53162.496360648039446No Hit
CATAGAGGGTGTTTTTCGGTGTTACAACCAATGCTCTTTCATCTATGAGA51512.4188776708147453No Hit
CATAGAGGGTGTTTTTCGGTGTCACAACCAATGCTCTTTCATCTATGAGA42241.9835642169523362No Hit
CATAGAGAATTTGCACACCACGGGACCATGCTCACACCTTGATCTATGAG41151.9323784926038974No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGAGAGGCTGTTTGAGATCT39041.8332942005165533No Hit
CATAGATCTTTGGTAGATATGGGGTCTCCCAGGCCTGAGATTGCTGCTAT35601.6717539328480864No Hit
CATAGACAGGAGGAGGAAGAAGAGGAATTCTTGCCAGGGATCTATGAGAC29861.4022070908664006No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGTGAGAAATGATGATGGCT28121.3204977694294435No Hit
CATAGAACAAGGCCAGAATTACCCTGGGAGAGGCTGTTTGAGATCTATGA27971.3134538624090162No Hit
CATAGACCACACCCAAACACCACGTACACTGACGACATGGTTCTACACAT18540.8706269077248181No Hit
CATAGAATGCAGGAGAATATACACAGGTTCATAGAATTAGCGGAGAGTGA17720.8321202160131486No Hit
CATAGAACAAGGCCAGAATTACCCTGGGTGAGAAATGATGATGGCTCTAT17340.8142756515613994No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACTAGGCAGTCTCAAACGTTG16870.7922047428973937No Hit
CATAGATCTGTGGCTCCCGATAAATGTGCTCATACAGAATTAGATCTAGC14660.6884245127964311No Hit
CATAGAACTATGTCAAGAGAATTTTGCACACCACGGGACATGGATGAAGC13800.6480394458793144No Hit
CATAGACAGCTGACCAGAAAATGTTTCAGACATGTTTCCTAGTTTCAGTT13800.6480394458793144No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAACAACAACATCTATGAGACCAAG12070.5667997182437192No Hit
CATAGAACCCAAAGAGTGGGCAACAGAACAACAACATCTATGAGACCAAG11900.5588166236205682No Hit
CATAGAGAAGAGAAGGCGACAATGGCTCCTGGGTGAGAAATGATGATGGC11660.5475463723878845No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGTGCTCATACAGAATTAGATC11240.5278234327306879No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGACACTGACGACATGGTGGGT9750.45785395632777653No Hit
CATAGACAGCTCACAGACTGCATACTACACTGACGACATGGTGGGTGCCT9340.43860061047194177No Hit
CATAGATTCTCCCTTGTGCTTTTGGTGTTACAACCAATGCTCTTTCATCT9220.43296548485559994No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAGTGAGCCCTTGTCCCTTTCTATG8610.40432026297252877No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACTGGCTGCTTTTCTCTTCTT8550.40150270016435785No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACTTCAGTTGACTATAAGAAA8460.3972763559521014No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTACATAGAGCTGCTTTTCTCT8220.3860061047194177No Hit
CATAGATCTGTGGCTCCCGATAAATGTACACTGACGACATGGTTCTACAC8030.3770838224935431No Hit
CATAGACTTGATGCCCAGGAAACCTCACACTGACGACATGGTGGGTGCCT7990.3752054472880958No Hit
CATAGACCCTTAGAGTTTCAGCCTCCCAGCAGAATCAGGGTTGGTTCTAT7560.3550129138295375No Hit
CATAGATCTGTGGCTCCCGATAAATGTGATCTGAGCAAGGATAGCCCTCT7130.3348203803709791No Hit
CATAGAACTATGTCAAGAGAATTTTGCACACCACGGGACCATGCTCACAC6910.32448931674101905No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTACACTGACGACATGGGCAAC6280.2949049072552242No Hit
CATAGACCACACCCAAACACCACGTACACTGACGACATGGTGGGTGCCTG6270.2944353134538624No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTACACTGATCTGAGCAAGGAT6190.29067856304296785No Hit
CATAGACAGCTGACCAGAAAATGTTTCAGTGTGAGGAATTCTTGCCAGGG5110.23996243249589105No Hit
CATAGATGTCTCCCAGGCTAGAGTGCGCCCTTGTCCCTTTCTATGAGACC5060.23761446348908194No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTCTATGAGACCAAGTCTCTGC4620.21695233622916177No Hit
CATAGAGAATTTGTACACCACGGGACATGGATGAAGCTGGATCTATGAGA4610.21648274242779997No Hit
CATAGACAGCTGACCAGAAAATGTTTCAGTGTAGCTTGGGTGACAGAGTG4500.2113172106128199No Hit
CATAGATCTTTGGTAGATATGGGGTCTCCCTTGTGCTCATACAGAATTAG4460.2094388354073726No Hit
CATAGAACCCAAAGAGTGAGCCCTTGTCCCTTTCTATGAGACCAAGTCTC4440.208499647804649No Hit
CATAGACAGCTCACAGACTGCATACTACACTGACTCTTCACTATGTCATC4340.20380370979103074No Hit
CATAGAGAAGAGAAGGCGACAATGGCCACATAGAATTAGCGGAGAGTGAG4190.19675980277060343No Hit
CATAGAGAAGAGAAGGCGACAATGGGACATGGATGAAGCTGGATCTATGA4070.19112467715426157No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAGAGTGAGCCCTTGTCCCTTTCTA3920.18408077013383423No Hit
CATAGAACAGACACAAATCTCAAAGCTTCTACACTGACGACATGGTGGGT3770.1770368631134069No Hit
CATAGAATCAAAATAGTACCCTTGCCTCTACACTGACGACATGGTGGGTG3650.17140173749706505No Hit
CATAGATTCTCCCTTGTGCTTTTGGTACACTGACGACATGGTGGGTGCCT3490.16388823667527588No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAACCCAAAGAGTGAGCCCTTGTCC3220.15120920403850668No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACTACACTGACGACATGGTGG3150.1479220474289739No Hit
CATAGAGAAGAGAAGGCGACAATGGAGACAGCCGCTCACCTCTATGAGAC3090.14510448462080303No Hit
CATAGACAGCTCACAGACTGCATACTACACTGGAGACAGCCGCTCACCTC3040.14275651561399388No Hit
CATAGAATGCAGGAGAATATACACAGGTTACACTGGGACATGGATGAAGC3010.14134773420990843No Hit
CATAGACTTGATGCCCAGGAAACCTCATGGTGTTACTTAAAGACTTGAGA2970.13946935900446114No Hit
CATAGAGCAAAAGAGAAACATTAAGCCATAGTACACTGACGACATGGTGG2960.1389997652030993No Hit
CATAGACAGCTGACCAGAAAATGTTTCAACACTGACTCTTCACTATGTCA2910.13665179619629023No Hit
CATAGAGCTATCAGTATACTCCCACCATGATCTATGGAGGCCTGAGATTG2890.13571260859356657No Hit
CATAGACCCTTAGAGTTTCAGCCTCCGTCTCATAGAAAGGGACATGGATG2840.13336463958675746No Hit
CATAGACAGGAGGAGGAAGAAGAGGAGGCCTGAGATTGCTGCTATCTATG2800.13148626438131017No Hit
CATAGACCCTTAGAGTTTCAGCCTCCCCCAGTATTTCATTATTAAAAGTT2740.12866870157313925No Hit
CATAGACTTGATGCCCAGGAAACCTCCGCCCAGCAGAATCAGGGTTGGTT2690.1263207325663301No Hit
CATAGACAGGAGGAGGAAGAAGAGGAATTCTTGCCAGGGATCTATGAGGA2680.1258511387649683No Hit
CATAGAACCCAAAGAGTGAGCAGCAGCACTGACGACATGGTTCTACACAT2660.12491195116224466No Hit
CATAGATGTCTCCTAGGCTAGAGTGAGCCCTTGTCCCTTTCTATGAGACC2640.12397276355952101No Hit
CATAGATCTTTGGTAGATATGGGGTCTCCCAGGCTAGAGTGAGCCCTTGT2580.12115520075135007No Hit
CATAGAATCAAAATAGTACCCTTGCCTCTATGAGACCAAGTCTCTGCTAC2560.12021601314862644No Hit
CATAGACACTGATAGGTTCCAACTTTCCTGGGCAACAGAACAACAACATC2520.11833763794317914No Hit
CATAGACAGGAGGAGGAAGAAGAGGAGGGACATGGATGAAGCTGGATCTA2520.11833763794317914No Hit
CATAGATTAGTTCTTATTCTTGGTATGGCACACTGACGACATGGTGGGTG2460.11552007513500821No Hit
CATAGATTCTCCCTTGTGCTTTTGGTATGGGACTTCAGACATGTTTCCTA2450.1150504813336464No Hit
CATAGAGAAGAGAAGGCGACAATGGCGTGAACCCGAGAGGTGGAGCTTGC2390.11223291852547547No Hit
CATAGACCTTCCTGTTGGCCACACAGGAGGATCACTTGAGCACAGGAATT2380.11176332472411364No Hit
CATAGAACCCAAAGAGTGAGCAGCAGCCCAAAGAGTGAGCCCTTGTCCCT2380.11176332472411364No Hit
CATAGATGTCTCCCAGGCTAGAGTGCTCATACAGAATTAGATCTAGCTCT2290.10753698051185724No Hit
CATAGAACCCAAAGAGTGAGCAGCAGAAGAGTGAGCCCTTGTCCCTTTCT2200.10331063629960084No Hit
CATAGAGCTTCTTTCTGTTCATATTGAGGAATTCTTGCCAGGGATCTATG2130.10002347969006808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)