FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212950
Sequences flagged as poor quality0
Sequence length150
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA4328320.325428504343744No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAATTCTCTATGTGT154997.278234327306879No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACATCTATGTGTAG118865.581591922986616No Hit
CATAGAACCAACCCTGATTCTGCTGCTCACTCTTTGGGTTCTATGTGTAG85254.003287156609533No Hit
CATAGAACAATCAGGCACCCACCATGCTGAAGTCCCATGATCTATGTGTA65853.092275181967598No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTGTGTGGCCAACAGGAAGGTCTA60412.8368161540267667No Hit
CATAGATGTTGTTGTTCTGTTGCCCAATATGAACAGAAAGAAGCTCTATG56492.6527353838929324No Hit
CATAGATGTTGTTGTTCTGTTCCCCAATATGAACAGAAAGAAGCTCTATG54402.5545902794083117No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCGAAAAACACCCTCTATGTGT53362.5057525240666823No Hit
CATAGATGAAAGAGCATTGGTTGTGACACCGAAAAACACCCTCTATGTGT43192.0281756280817094No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAATTCTCTATGTG42521.9967128433904673No Hit
CATAGATCTCAAACAGCCTCTCCCAGGAAAGTTGGAACCTATCAGTGTCT39161.838929326132895No Hit
CATAGATAGCAGCAATCTCAGGCCTGGGAGACCCCATATCTACCAAAGAT36671.7220004695938012No Hit
CATAGATCCCTGGCAAGAATTCCTCTTCTTCCTCCTCCTGTCTATGTGTA29701.3946935900446114No Hit
CATAGATCTCAAACAGCCTCTCCCAGGGTAATTCTGGCCTTGTTCTATGT28701.3477342099084293No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAAAGTTGGAACCTATCAGTGT28331.3303592392580417No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTATGAACCTGTGTATATTCTCCT17700.831181028410425No Hit
CATAGAGCCATCATCATTTCTCACCCAGGGTAATTCTGGCCTTGTTCTAT17690.830711434609063No Hit
CATAGACACAACGTTTGAGACTGCCTAGTGCCATACCAAGAATAAGAACT17420.818032401972294No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACATTTATCGGGAGCCACAGA15070.7076778586522658No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAAACATTTTCTGGTCAGCTGT14450.6785630429678329No Hit
CATAGATGTTGTTGTTCTGTTGCCCACTCTTTGGGTTCTATGTGTAGAAC14230.6682319793378727No Hit
CATAGATCCAGCTTCATCCATGTCCCGTGGTGTGCAAAATTCTCTTGACA13890.6522657900915708No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTATGTGTAGAACCATG13410.6297252876262033No Hit
CATAGATGTTGTTGTTCTGCTGCTCACTCTTTGGGTTCTATGTGTAGAAC11860.5569382484151209No Hit
CATAGAGCCATCATCATTTCTCACCCAGGAGCCATTGTCGCCTTCTCTTC11640.5466071847851609No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGAATCTATGTGTA11520.540972059168819No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAGGAAAGTTGGAACCTATC11290.530171401737497No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTCAGGAAAGTTGGAA9760.45832355012913834No Hit
CATAGATGAAAGAGCATTGGTTGTAACACCAAAAGCACAAGGGAGAATCT9550.44846208030054No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTATGCAGTCTGT9550.44846208030054No Hit
CATAGAAAGGGACAAGGGCTCACTCTGCTGCTCACTCTTTGGGTTCTATG9360.4395397980746655No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCCAGTGCCATACCAAGAATAAGAA8830.4146513266024889No Hit
CATAGAGGTGTTTCTTATAGTCAACTGAAGTGCCATACCAAGAATAAGAA8680.4076074195820615No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCTCTATGTAGAAGCTTTGAGATTT8440.39633716834937777No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGAGGTTTCCTGGGC8130.3817797605071613No Hit
CATAGAACCAACCCTGATTCTGCTGGGAGGCTGAAACTCTAAGGGTCTAT7570.3554825076308993No Hit
CATAGAGGGCTATCCTTGCTCAGATCACATTTATCGGGAGCCACAGATCT7310.3432730687954919No Hit
CATAGATCAAGGTGTGAGCATGGTCCCGTGGTGTGCAAAATTCTCTTGAC6850.3216717539328481No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACGTGGTGTTTGGG6390.30007043907020425No Hit
CATAGAGGGCTATCCTTGCTCAGATCAGTGTAGAAGCTTTGAGATTTGTG6180.29020896924160605No Hit
CATAGATGTTGTTGTTCTGTTGCCCATGTCGTCAGTGTAGAAGCTTTGAG6120.2873914064334351No Hit
CATAGATGCCAAGAAGAGAAAAGCAGCTCTATGTGTAGAACCATGTCGTC5640.2648509039680676No Hit
CATAGATCCCTGGCAAGAATTCCTCACACTGAAACATTTTCTGGTCAGCT5300.24888471472176565No Hit
CATAGAAAGGGACAAGGGCGCACTCTAGCCTGGGAGACATCTATGTGTAG5160.24231040150270014No Hit
CATAGACTCACTCTGTCACCCAAGCTACACTGAAACATTTTCTGGTCAGC4530.21272599201690537No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACAAGGGAGACCCCATATCTA4520.21225639821554357No Hit
CATAGATGGTAAGATGACATAGTGAAGAGTCAGTGTAGTATGCAGTCTGT4440.208499647804649No Hit
CATAGAAAGGGACAAGGGCTCACTCTCTGCTGCTCACTCTTTGGGTTCTA4190.19675980277060343No Hit
CATAGAGTTCTCACTCTCCGCTAATTCTATGTGGCCATTGTCGCCTTCTC4050.1901854895515379No Hit
CATAGATCCAGCTTCATCCATGTCCCATTGTCGCCTTCTCTTCTCTATGT3960.1859591453392815No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAGGCAAGGGTAC3730.1751584879079596No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGAAGCTTTGAGAT3710.17421930030523597No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGTTCTGCTGCTCACTCTTTG3630.1704625498943414No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACCAAAAGCACAAG3610.16952336229161777No Hit
CATAGATAGCAGCAATCTCAGGCCTCCAAACTTGGACTGAAATCTGTACC3460.16247945527119043No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTAGTATGCAGTCTGTGAGCTGTC3160.14839164123033574No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTAGTGCCATACCAAG3140.1474524536276121No Hit
CATAGAGGTGAGCGGCTGTCTCCATTGTCGCCTTCTCTTCTCTATGTGTA3080.1446348908194412No Hit
CATAGATGGTAAGATGACATAGTGAAGAGTCAGTGTTGAAACATTTTCTG3070.14416529701807937No Hit
CATAGATCCAGCTTCATCCATGTCCCAGTGTAACCTGTGTATATTCTCCT2970.13946935900446114No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTACTATGGCTTAATG2930.13759098379901386No Hit
CATAGATAGCAGCAATCTCAGGCCTCCATAGATCATGGTGGGAGTATACT2880.13524301479220474No Hit
CATAGATCCAGCTTCATCCATGTCCCTTTCTATGAGACGGAGGCTGAAAC2860.1343038271894811No Hit
CATAGATAGCAGCAATCTCAGGCCTCCTCTTCTTCCTCCTCCTGTCTATG2810.13195585818267197No Hit
CATAGAGAAGCTTTGAGATTTGTGTCTGTTCTATGTGTAGAACCATGTCG2780.1305470767785865No Hit
CATAGAGAAACTTTTAATAATGAAATACTGGGGGAGGCTGAAACTCTAAG2730.12819910777177743No Hit
CATAGAACCAACCCTGATTCTGCTGGGCGGAGGTTTCCTGGGCATCAAGT2710.12725992016905377No Hit
CATAGAAAGGGACAAGGGCTCACTCTAGCCTGGGAGACCCCATATCTACC2650.12444235736088283No Hit
CATAGATCCCTGGCAAGAATTCCTCATAGATCCCTGGCAAGAATTCCTCT2610.12256398215543556No Hit
CATAGAACAATCAGGCACCCACCATGTCGTCAGTGTGCCATACCAAGAAT2600.12209438835407373No Hit
CATAGAAAGGGACAAGGGCTCACTCTTTGGGCTGCTGCTCACTCTTTGGG2590.1216247945527119No Hit
CATAGAGCTAGATCTAATTCTGTATGAGCACTCTAGCCTGGGAGACATCT2560.12021601314862644No Hit
CATAGAACTGAAACTAGGAAACATGTCTGAAGTCCCATACCAAAAGCACA2550.11974641934726461No Hit
CATAGATCCAGCTTCATCCATGTCCCTCCTCTTCTTCCTCCTCCTGTCTA2530.11880723174454097No Hit
CATAGATGTTGTTGTTCTGTTGCCCAGGAAAGTTGGAACCTATCAGTGTC2510.11786804414181734No Hit
CATAGACTCACTCTGTCACCCAAGCTGGATTGCAGTGGCGCGATCTCTGC2380.11176332472411364No Hit
CATAGACTCACTCTGTCACCCAAGCTGGAGTGCAGTGGTGTGATCATATC2330.10941535571730454No Hit
CATAGAAAGGGACAAGGGCTCACTCTTCTGCTGCTCACTCTTTGGGTTCT2300.10800657431321906No Hit
CATAGATCCCTGGCAAGAATTCCTCAATATGAACAGAAAGAAGCTCTATG2150.10096266729279174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)