FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96993
Sequences flagged as poor quality0
Sequence length150
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2005320.674687864072666No Hit
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT986310.168775066241894No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG54415.609683173012486No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG45834.72508325343066No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG37173.8322353159506357No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC32213.3208582062623075No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG25332.6115286670172075No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT25322.6104976647799325No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG23282.4001732083758625No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT22482.317693029393874No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT17221.7753858525873003No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC15621.6104254946233232No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT12251.2629777406616973No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA11091.143381481137814No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA9550.9846071365974864No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT8880.9155299867000711No Hit
CATAGACCCTCTCTTACCCTTCCACCAACATGCTTTTAGTCACGTCTATG8580.8845999195818254No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA7350.7577866443970184No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT6960.717577557143299No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC6780.6990195168723516No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACAGTTGTGGAAAGTGC6330.6526244161949831No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGTGCTCGTATCTTGG5930.6113843267039889No Hit
CATAGACCTCCCATGGTTCCTGATGATGGGAGTGTCTGCTGGTCTATGTG5520.5691132349757199No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC5520.5691132349757199No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT5320.5484931902302228No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT5260.5423071768065737No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT4760.4907570649428309No Hit
CATAGATGGGACAGCGACAATGACAGTGGGGTCCTAAATGTCTTTGTCCT4600.4742610291464332No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG4600.4742610291464332No Hit
CATAGAGGCTGCAGTGAACAATGATCGCTTGGTCTCGTAAAGGCTGGGGT4590.4732300269091584No Hit
CATAGATGGCCCAGAATCCTTTGTAGACCATGGAGAGAATAATCCGTCTA4020.4144628993844917No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTAGCCCGTTCTCTCTGTT3960.40827688596084255No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTACCCTGGGAGAAGAAAT3930.405183879249018No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC3810.39281185240171973No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACACGAATGAGGAAACAGGCAC3730.3845638345035209No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGTATGATGGGAGTGTCTGC3720.383532832266246No Hit
CATAGACCCTCTCTTACCCTTCCACCCTGGGAGAAGAAATGTTGGTCTAT3330.3433237450125267No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT3300.3402307383007021No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCCATGTCGTCAGTGTGGT2780.2866186219624096No Hit
CATAGATGGTATTTGAGTGGGGAAACAGACAGTTGTGGAAAGTGCAATGA2740.28249461301331025No Hit
CATAGACCAGTACGCCTTACCCCTTGGTGCTGGAATAGTTGGACTCTATG2740.28249461301331025No Hit
CATAGACCAGTACGCCTTACCCCTTGTCAGACCCAGGCTACACATCTATG2600.2680605816914623No Hit
CATAGATCTAGCCCATCACTTCAGCATCGCAGGCCCTTCAGCATCATTTC2420.2495025414205149No Hit
CATAGATTCAGTTTACTTAGAGGCAGACATAGCAGGCCCTTCAGCATCAT2310.23816151681049147No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCAACATGCTTTTAGTCAC2160.22269648325136865No Hit
CATAGATTCCTCCAAAGACTGCAGGGTACGGTGCATAAAAACTGTCGGAG2090.21547946759044467No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGTAGAACCATGTCGTCAGTG2050.21135545864134525No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA2030.20929345416679557No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGTCGTCAGTGTACCCTGGG1980.20413844298042128No Hit
CATAGAGCTAATAAAGACATACCTGAGCCAGTGTGTCTGAGAAAAGATGC1900.1958904250822224No Hit
CATAGACCAGTACGCCTTACCCCTTGTATGCTTTATTCTCACGTGGATCT1680.17320837586217563No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG1600.16496035796397676No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGC1470.15155732887940368No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG1470.15155732887940368No Hit
CATAGATCTAGCCCATCACTTCAGCATCCAGGCCCTTCAGCATCATTTCT1440.1484643221675791No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA1440.1484643221675791No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG1420.14640231769302942No Hit
CATAGATTCAGAGAAGGACAGCGTGGACACTGTCATTGTGGGTTTTAACT1400.14434031321847968No Hit
CATAGAGCAAGCCCTCTAAGCCTATCAATCCTGTGTTCATGGCTTCTATG1380.14227830874392997No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG1320.13609229532028083No Hit
CATAGATGGCAAATGGTGGGATCTCTGAGACCATGCATTAGGAAGTCTTC1280.13196828637118144No Hit
CATAGAGCTAATAAAGACATACCTGAGCCACACTGACGAATGAGGAAACA1270.13093728413390657No Hit
CATAGACCAGTACGCCTTACCCCTTGATAGACCATGGAGAGAATAATCCG1240.12784427742208201No Hit
CATAGACCAGTACGCCTTACCCCTTGACAGTTGTGGAAAGTGCAATGAGT1190.12268926623570772No Hit
CATAGATCTAGCCCATCACTTCAGCATGTTGATGTTCGCACCCAAGCTCT1190.12268926623570772No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA1180.12165826399843287No Hit
CATAGATCTAGCCCATCACTTCAGCACAGGCCCTTCAGCATCATTTCTAT1160.11959625952388316No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG1140.11753425504933346No Hit
CATAGAGCAACCCCAGCAGTTTGAGACACTGTCATTGTGGGTTTTAACTA1080.11134824162568432No Hit
CATAGAGTGTGTAGTGTGGTATAGCGTCAGTGATGTGCTCGTATCTTGGC1020.1051622282020352No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTAGCAGGCCCTTCAGCA1000.1031002237274855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)