FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163507
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG6252838.24178781336579No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG85545.231580299314403No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG63893.9074779673041524No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA57333.506271902731993No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC46102.8194511549964223No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC32972.016427431241476No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG27601.6880011253340834No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA26291.6078822313417773No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA21861.3369458188334444No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA19481.191386301503911No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC19281.1791544092913453No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC18631.1394007596005065No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA12280.7510381818515415No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG11410.6978294507268802No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT9950.6085366375751496No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA9890.60486706991138No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT9500.5810148800968765No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA9090.5559395010611167No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG8740.5345336896891264No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA7630.4666466879093861No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA7360.4501336334224223No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG7010.4287278220504321No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT6500.39753649690838927No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGCTAGTCCGTCACCCCTAAT6350.3883625777489649No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGTGTGGAGGGAAGGAAGGGCAAAC6310.3859161993064517No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA6230.3810234424214254No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT5910.36145241488132007No Hit
CATAGACCCTTCTCCATGCCACATCAGGGATTATCAGTAGTGCTCACATC5610.3431045765624713No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGGAGGGAAGGAAGGGCAAAC5070.3100784675885436No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG4380.2678784394551915No Hit
CATAGAAGATCCCATAGCAGCTTTGCAGAGTCACCTCAAGCTCAGACACT4370.2672668448445632No Hit
CATAGAAGATCCCATAGCAGCTTTGCCATGTCTTCTGTGTTTGGTCTATG4350.2660436556233067No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG4340.26543206101267836No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCACATAGAGCCATGGGTCCTTTTCA4320.2642088717914218No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC4320.2642088717914218No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT4320.2642088717914218No Hit
CATAGATGTGCCTCTCCAACATTCATCTCTCCACACTCATGCAAAGCTGG4220.25809292568513886No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC4200.2568697364638823No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA3900.23852189814503355No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGGGATTATCAGTAGTGCT3580.2189508706049282No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG3510.21466970833053017No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG3470.21222332988801704No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC3470.21222332988801704No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT3360.20549578917110584No Hit
CATAGATCATGGGACTTCAGCATGGCCATGGGTCCTTTTCACATCATCTA3120.19081751851602685No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC3020.1847015724097439No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG2930.17919722091408932No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA2890.17675084247157613No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2830.17308127480780638No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG2810.17185808558654983No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC2770.16941170714403664No Hit
CATAGATCATGCAAAGAACACAGGCCCCACCCTTATGATCGTATCTATGA2730.16696532870152347No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAATGGCATTAAATGACTTGCCCAA2720.1663537340908952No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2630.16084938259524056No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG2570.15717981493147082No Hit
CATAGAGGAAGTGCCTACCTTAAATTGATGGAGACAGCCGCTCACCTCTA2540.15534503109958595No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT2540.15534503109958595No Hit
CATAGAGCTTCTGATCACTTTCGCCCACACTCATGCAAAGCTGGTCTATG2530.15473343648895765No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG2520.15412184187832936No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCATCTATGAGACCAAGTCTC2520.15412184187832936No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG2360.1443363281082767No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA2320.14188994966576354No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG2260.1382203820019938No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA2220.13577400355948063No Hit
CATAGAAGGAGGGGAAACTGAGGCCACTGACGACATGGTTCTACACATAG2090.12782327362131285No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT2070.12660008440005627No Hit
CATAGAAGATGGTCTGCTACACTGGTATAGAGGAGCACCCTGAAGTTTGA2040.12476530056817141No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTGGAGGGAAG2020.12354211134691481No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATAGAGCCATGGGTCCTTTTCACA1980.12109573290440166No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCGGAGGGAAGGAAGGGCAA1960.11987254368314507No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1960.11987254368314507No Hit
CATAGAACTTTGTGCCCCCAGTGTCTAGGGGCTCTTTGGCGTCCCTGGCA1930.1180377598512602No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGCGCGGTGGCTCATGCCTGTAAT1850.11314500296623385No Hit
CATAGATGTGCCTCTCCAACATTCATAGCACCCTGAAGTTTGAGAGCAAG1810.1106986245237207No Hit
CATAGATCATGCAAAGAACACAGGCCAGGTGCAGTGGCTCACACCTGTAA1710.10458267841743779No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT1670.10213629997492461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)