FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123252
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA2457919.942069905559343No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA86837.044916106838023No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA56184.558141044364391No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCACCCTGCTTATCAAACAT40813.311102456755265No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCATAAATTCAACAGGCTTT36462.958167007431928No Hit
CATAGAGGTGAGCGGCTGTCTCCATGCTGAAGTCCCATGATCTATGTGTA32562.6417421218316943No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT30452.470548145263363No Hit
CATAGAGGTGAGCGGCTGTCTCCAAACTGGACAATGAGAGGATCTATGTG25212.045402914354331No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA23821.9326258397429656No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC23391.8977379677408885No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA22611.834452990620842No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT22181.7995651186187647No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG15331.2437932041670723No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT15031.2194528283516697No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT14271.1577905429526498No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG13181.069353844156687No Hit
CATAGAAAGGCCTTCCTGTATCAGTCATAAATTCAACAGGCTTTCATCTA11430.9273683185668387No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCCCTTAAGAAAATTTAATTG10110.8202706649790673No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT9430.7650991464641548No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT9240.7496835751143998No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG5710.46327848635316266No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT5380.4365040729562198No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG5350.43407003537467953No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGCCAGATGATATGAACCCAAA5070.4113523512803038No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAATTAGCCAGGCA4750.3853892837438743No Hit
CATAGAGGTGAGCGGCTGTCTCCATCACTTATACGCCTCCCTGTCTATGT4530.3675396748125791No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTGCCATGCTGAAGTCCCATG4400.35699217862590465No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC4160.33751987797358257No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTATTGGAAGTTAGGAAGC3960.3212929607633142No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG3770.30587738941355924No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAACCCCTTAAGAAAATTTAATTGT3590.2912731639243177No Hit
CATAGACTGTCATTGCTTGCCCATTGAACATAGCCTTTGGGGTTTCTATG3410.2766689384350761No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT3370.27342355499302246No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA3350.2718008632719956No Hit
CATAGACTGTCATTGCTTGCCCATTGAATGAGAGTCCCTGTTGCTCTATG3210.26044202122480775No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCAC3130.25395125434070037No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT2920.23691299126991855No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCAC2920.23691299126991855No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA2880.23366760782786486No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG2760.22393145750170385No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA2720.22068607405965013No Hit
CATAGAGGTGAGCGGCTGTCTCCATCTATGAGGCCATGCTGAAGTCCCAT2560.20770454029143542No Hit
CATAGAGTTCAAATGGCCAATCAGGTCGTCAGTGTTCATCCCATCAACTT2500.2028364651283549No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATTTGGAAGTACACAAAAAGGGCA2390.19391166066270732No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG2370.19228896894168046No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCAC2370.19228896894168046No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA2300.18660954791808654No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG2170.17606205173141207No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCAC2120.17200532242884495No Hit
CATAGATTGAGCTTAAATGATCTGTGCAAGACTAGGCAATTTACAAATCT2060.16713724726576445No Hit
CATAGAGGTGAGCGGCTGTCTCCAGCTTCCACATGATGGACATCTATGTG2060.16713724726576445No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGTACCACAGGCATGTGCCAC2050.16632590140525103No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCAC2040.1655145555447376No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCAC2030.1647032096842242No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTGTGTGCCAC2020.16389186382371077No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTGCCA2000.16226917210268393No Hit
CATAGAGGTGAGCGGCTGTCTCCAGTGTGCCATGCTGAAGTCCCATGATC1980.1606464803816571No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAATACAAAAAATTAGCCAGGC1970.15983513452114367No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT1940.1574010969396034No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGCCAC1880.1525330217765229No Hit
CATAGAGGTGAGCGGCTGTCTCCATGTCGTCAGTGTGCCATGCTGAAGTC1880.1525330217765229No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG1800.14604225489241554No Hit
CATAGAATCCTTTCCCCATTGCTTGTGAATAGCCATGCTGAAGTCCCATG1690.13711745042676793No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCAC1560.12656995424009346No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA1550.12575860837958003No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCAC1530.12413591665855321No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC1530.12413591665855321No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTGTGCCAT1510.12251322493752635No Hit
CATAGAGGTGAGCGGCTGTCTCCACTAAAAACACAAAAATTAGCCAGGCA1480.1200791873559861No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCAC1450.11764514977444585No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCGCCAC1400.11358842047187875No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG1400.11358842047187875No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGATGTGCGCCAC1390.11277707461136532No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT1340.10872034530879825No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCCTCAGGTCA1330.10790899944828482No Hit
CATAGAGCAGAAAACCTTTGAATAACAGACATAGAGCAGGAATTAGACTC1320.10709765358777139No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA1250.10141823256417745No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCATGTCGTCAGTGTAGAT1240.10060688670366404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)