FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80670
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3617044.836990207016235No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG29163.61472666418743No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG18462.2883351927606297No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA17632.185446882360233No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA16552.051568117019958No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA14481.7949671501177638No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC11961.4825833643237882No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC11001.3635800173546546No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC11001.3635800173546546No Hit
CATAGAGGGGCATGCTGGATAAATCTACACATAGATCATGGGACTTCAGC9931.2309408702119746No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG9801.2148258336432378No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG8141.0090492128424446No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCGGATTCAAGCAATTCTTCTAT5800.7189785546051817No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG4980.6173298624023801No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTACACTGACGACATGGTTCTAC4150.5144415520019834No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC3660.45370026031982147No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT3540.43882484194867977No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA3240.40163629602082557No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA2740.33965538614106855No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCATTTCCCCTCTCTCTGAATAACTC2660.32973844056030743No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA2570.31858187678195116No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2330.2888310400396678No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT2300.2851121854468824No Hit
CATAGATCAACAATGGATGAGCAAAAGGGATTATCAGTAGTGCTCACATC2190.27147638527333584No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTAGGGATTATCAGTAGTGCT2160.2677575306805504No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2120.26279905789016983No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2090.2590802032973844No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGCAGAGGTTGCAGTGAGCTGAGA2030.25164249411181355No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT1940.24048593033345728No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA1940.24048593033345728No Hit
CATAGAAGATGGTCTGCTACACTGGTCACTGACGACATGGTTCTACACAT1940.24048593033345728No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCAGGAGGGAAGGAAGG1930.23924631213586214No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA1840.2280897483575059No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG1810.22437089376472047No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA1810.22437089376472047No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC1770.21941242097433988No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1750.21693318457914965No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGATCTGCG1680.20825585719598363No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT1680.20825585719598363No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA1680.20825585719598363No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA1620.20081814801041278No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1610.19957852981281765No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGCATGTTG1540.19090120242965167No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCAAGA1540.19090120242965167No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG1540.19090120242965167No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTTCTTATAGCCAGTGTCTCCCCTC1510.18718234783686624No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC1490.18470311144167595No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTGACGACATGGTTCTACACAT1470.18222387504648568No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1380.1710673112681294No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1360.16858807487293911No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGACGCCATGGGTCCTTTTC1350.167348456675344No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT1310.16238998388496342No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA1300.1611503656873683No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTATGGAGGGAAGGAAGGG1280.15867112929217803No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATCTGGACCTGCG1250.1549522746993926No Hit
CATAGATCACCTACACAGACAGCTTTCCCTAATAGTTTTTCCAAATATAA1240.15371265650179744No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1190.14751456551382175No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1160.14379571092103632No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGACGCCGTGGCTCACACCTGTAAT1130.1400768563282509No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCTTCTTATAGCCAGTGTCTCCC1130.1400768563282509No Hit
CATAGAGTCTCGCTAATAGTTTTACCTCAAAACCACTTGAACATTGCCTT1110.1375976199330606No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG1070.13263914714268005No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGGGAGGGAAGG1030.1276806743522995No Hit
CATAGACTCAAGCAATCCTCCCACCTACACTGACGACATGGTTCTACACA1020.12644105615470436No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTAGAAGCGCA990.12272220156191893No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGGTGCGGTGGCTCATGCCTGTAAT990.12272220156191893No Hit
CATAGAAGAATTGCTTGAATCCGGGAGGGAAGGAAGGGCAAACTCTATGA990.12272220156191893No Hit
CATAGACACCTGGATCCTGTGTTGTCTTAGGTAGAGGAGTTTCAAACATC950.11776372877153837No Hit
CATAGATCATGGGACTTCAGCATGGCCCTCTATGAGCATGTTGAGATGAA930.1152844923763481No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG910.1128052559811578No Hit
CATAGAAGGAGGGGAAACTGAGGCCATAGAAGGAGGGAAGGAAGGGCAAA870.10784678319077723No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGTG860.10660716499318211No Hit
CATAGATCACCTACACAGACAGCTTTCCACACTGGAGACAGCCGCTCACC840.10412792859799182No Hit
CATAGATCATGGGACTTCAGCATGGTGGTGTTTGCAGATTTGGACCTGCG840.10412792859799182No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGAGTGGACTGGTGGCTGCGCTTCT810.10040907400520639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)