FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162337
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG5542734.14317130413892No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGGAGGTCTATGAG88315.439918194866235No Hit
CATAGAGCTTCTGATCACTTTCGCCCCACCCTTATGATCGTATCTATGAG64263.9584321504031736No Hit
CATAGAACCAGAGTAATGAGGGATGCTCAGGTCTCCAATGGTGTCTATGA56173.460086117151358No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTCATGCAAAGCTGGTC53653.3048534838022143No Hit
CATAGATGTGGCTATGCAGACTGAGCAGAGTTGGGTGTGTCTATGAGACC34902.1498487713829872No Hit
CATAGAACCAGAGTAATGAGGGATGCTCTCTCCAGAACCCACCATCTATG26981.6619747808571057No Hit
CATAGATCATGCAAAGAACACAGGCCACACTCATGCAAAGCTGGTCTATG20211.2449410793596036No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTG19641.2098289361020593No Hit
CATAGATGTGGCTATGCAGACTGAGTAGAGTTGGGTGTGTCTATGAGACC18521.1408366546135509No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTAGGTAGAGGAGTTTCAAACATCT18161.1186605641351015No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCAGATTTGGACCTGCGAGCGGGTTC17601.0841644233908476No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCCAGGACTA15030.9258517774752522No Hit
CATAGATGTGCCTCTCCAACATTCATTTCCCCTCTCTCTGAATAACTCTA13140.809427302463394No Hit
CATAGATGTGGCTATGCAGACGGAGTGAGGGCAGTAAGTCTATGAGACCA12290.7570670888337225No Hit
CATAGACCCTTCTCCATGCCACATCATTTCCCCTCTCTCTGAATAACTCT11690.7201069380363072No Hit
CATAGATCACCCAGGTAATCACTAGGTACACTGACGACATGGTTCTACAC11210.690538817398375No Hit
CATAGATGTTAGGTGCTCATTTTAAAACATCAGCATGTTGAGATGAATAA11000.6776027646192797No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGGAAGGAAGGGCAAACT10700.659122689220572No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCCAGGACTA10660.656658679167411No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCGTGGAGGAAAGCAATCACCGCCA10440.6431066238750254No Hit
CATAGAAGATCCCATAGCAGCTTTGCTACCGTAAGTTTTTCCAAATATAA9680.5962904328649661No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTTCTTA9260.5704183273067754No Hit
CATAGATCATGCAAAGAACACAGGCAGATCATGAGGTCAGGTCTATGAGA8950.5513222493947775No Hit
CATAGACCCTTCTCCATGCCACACTCATGCAAAGCTGGTCTATGAGACCA7670.47247392769362495No Hit
CATAGAACTTGTAATCATTCCCTACTTCCCACACTGACGACATGGTTCTA7560.4656979000474322No Hit
CATAGAGGGCTGTTTTGAGTGTTTGCCATGTCTTCTGTGTTTGGTCTATG7320.4509138397284661No Hit
CATAGATGTGGCTATGCAGACTGAGTGAGGGCAGTAAGTCTATGAGACCA7140.43982579448924153No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTATTCTTATAGCCAGTGTCT5960.36713749792099154No Hit
CATAGAACTTTGTGCCCCCAGTGTCTTCTTATAGCCAGTGTCTCCCCTCT5930.36528949038112074No Hit
CATAGAAGGAGGGGAAACTGAGGCCACACTCATGCAAAGCTGGTCTATGA5380.33140935215015677No Hit
CATAGAAGATCCCATAGCAGCTTTGCCATGTCTTCTGTGTTTGGTCTATG5180.3190893018843517No Hit
CATAGAACACAGATCTGCTTGGAGGGAAGGAAGGGCAAACTCTATGAGAC4670.2876731737065487No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTTCT4660.28705717119325846No Hit
CATAGAGCTTCTGATCACTTTCGCCCTCTCTCCAGAACCCACCATCTATG4470.27535312344074364No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTTCTTATAGCCAGTGTCTCC4440.27350511590087284No Hit
CATAGAAGATCCCATAGCAGCTTTGCCGTGGAGGAAAGGAGGTCTATGAG4400.2710411058477119No Hit
CATAGAAGATGGTCTGCTACACTGGTACACTGGTACACTGACGCCATGGG4030.24824901285597245No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAATGGCATTAAATGACTTGCCCAA3950.2433209927496504No Hit
CATAGAGCCTGGGGTAGTTTTCTCTCAACGACATGGTTCTACACATAGAG3830.23592896259016735No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCTTCTTATAGCCAGTGTCTCCCC3810.23469695756358688No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATGAGACCAAGTCTCTT3650.2248409173509428No Hit
CATAGACTCAAGCAATCCTCCCACCTCAGCTTCCCTAAGTACCAGGATTA3570.21991289724462076No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGGAGGGAAGGAAGGGCAAACTCT3400.20944085451868644No Hit
CATAGATGTGCCTCTCCAACATTCATGCAAAGCTGGTCCACACTCATGCA3270.2014328218459131No Hit
CATAGACCCTTCTCCATGCCACATCATCCATGGGTCCTTTTCACATCATC3230.19896881179275214No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTATTCTTATAGCCAGTGT3220.1983528092794619No Hit
CATAGATCATGGGACTTCAGCATGGCTAGTCCGTCACCCCTAATCTATGA3040.18726476404023729No Hit
CATAGAACACAGATCTGCTTGGAGGTACACTGAGCAGAGTTGGGTGTGTC2940.18110473890733475No Hit
CATAGAAGATGGTCTGCTACACTGGTGGTTCCACACTCATGCAAAGCTGG2730.1681686861282394No Hit
CATAGACCCTTCTCCATGCCACATCATCTATGAGACCAAGTCTCTGCTAC2710.1669366811016589No Hit
CATAGAAGGAGGGGAAACTGAGGCCAAGTCTCTGCTACCGTAGGCTAGTC2640.16262466350862712No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2600.1601606534554661No Hit
CATAGAAGGAGGGGAAACTGAGGCCAGATAGGCTAAGTTAGTGGCCCAAT2560.15769664340230508No Hit
CATAGACCCTTCTCCATGCCACATCATGCAAAGCTGGTCTATGAGACCAA2390.14722460067637078No Hit
CATAGATGTGCCTCTCCAACATTCACCAAGTCACCCAGCCTCTATGAGAC2280.14044857303017796No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCCCCTCTTCTTATAGCCAGTGTCT2230.1373685604637267No Hit
CATAGAAGGAGGGGAAACTGAGACCAAGTCTCTGCTACCGTACTCGTTAT2210.13613655543714617No Hit
CATAGATCATGGGACTTCAGCATGGCATGTTGAGATGAATAATTGAGACT2200.13552055292385595No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG2140.1318245378441144No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG2070.12751252025108262No Hit
CATAGATTAAGTGCAGCTATATTGGAGGAAAAGTCTATGAGACCAAGTCT2060.12689651773779237No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG2060.12689651773779237No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG2020.12443250768463135No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1980.12196849763147033No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1960.12073649260488982No Hit
CATAGAACTTTGTGCCCCCAGTGTCTCTCTCCAGAACCCACCATCTATGA1930.11888848506501906No Hit
CATAGACCCTTCTCCATGCCACATCAAGAATGAGGAGAGTACTACTTTCT1860.1145764674719873No Hit
CATAGATGTGGCTATGCAGACTGAGTCCTGGCATATACAAGGTGTCTATG1850.11396046495869704No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1740.10718443731250424No Hit
CATAGATTAAATGCTGCTATGAGAGAGGTGTCTCATAGAGGAGCACCCTG1740.10718443731250424No Hit
CATAGAAGGAGGGGAAACTGAGGCCACTGACGACATGGTTCTACACATAG1680.10348842223276271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)