FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116197
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG3870533.30981006394313No Hit
CATAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC74556.415828291608216No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA32952.8357014380749934No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT30392.6153859393960257No Hit
CNTAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG25702.2117610609568232No Hit
CATAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT25672.209179238706679No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACACTCA19731.6979784331781371No Hit
CATAGAACTTCACAAGGGCTTTAGGGGCTACACATGGCTATGCAATCTAT18511.5929843283389415No Hit
CATAGACCTGGGCTTAGGGGCTACACATGGCTATGCAATCTATGAGACCA13661.1755897312323036No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGTGGTGTGGTG12571.0817835228103996No Hit
CATAGACCTGGGCTTAGGGGCTATACATGGCTATGCAATCTATGAGACCA12301.0585471225591023No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAATCA12261.0551046928922434No Hit
CATAGACCTGGGCTTAGGGGCTATACGTGAATGTGGATCAGAACTTCTAT10050.8649104537982908No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGCACAGATCATTTAAGCTCAA7170.6170555177844522No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTGGTGCACATGCC6000.5163644500288304No Hit
CATAGACCTTTGGGTTCATATCATCTGGAGACAGCCGCTCACCTCTATGA5970.5137826277786862No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTAATCCCAGCTACTCAGG5550.4776371162766681No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGCAAGCAATGACAG5520.4750552940265239No Hit
CATAGAAACCCCAAAGGCTATGTTCAAAATGGTCAAACAGGAGGTCTATG5420.46644921985937676No Hit
CATAGATCATGGGACTTCAGCATGGCCAACATGGTGAACCTGTCTCTACT5320.4578431456922296No Hit
CATAGATCCCATCCAATAATAATGAGCAAGCAATGGGGAAAGGATTCTAT4610.3967400191054847No Hit
CATAGACACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGT4550.39157637460519634No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTACCATGTTTTCATCCTGCTT4430.38124908560461973No Hit
CATAGATCCCATCCAATAATAATGAGCAGAATTACCTCTGGATGGTCTAT4090.35198843343631936No Hit
CATAGATGCCCTTTTTGTGTACTTCCACACTGACGACATGGTTCTACACA4020.34596418151931635No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTCAATGGGCAAGCAATGACAG4000.3442429666858869No Hit
CATAGAGGATCCCATCTGAGTTGGTCAGTGTTGCTTCCTTCTGCTGGCTA3890.334776285102025No Hit
CNTAGAGAGATTTTGGGCTGAGACGATAATGCCGCATATCTACAACTATC3720.3201459590178748No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGAGTT3710.3192853516011601No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTCAGTGTATACGTGAATGTGG3660.3149823145175865No Hit
CATAGACACCATGCCTGGCTAATTTTAAAATTAGTACCTATAATCTCAGC3640.31326109968415705No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGTCCTTCCTAACCATGGGCATA3100.2667882991815623No Hit
CATAGAGCTGGCTTCCTAACTTCCAATGGGCAAGCAATGACAGTCTATGA3090.2659276917648476No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTAATGTTAGCATGTCTATGAGAC2840.24441250634697967No Hit
CATAGACAGGGAGGCGTATAAGTGATGACTGATACAGGAAGGCCTTTCTA2830.243551898930265No Hit
CATAGAGATGTTTGATAAGCAGGGTGATACGGTTGCACAGATCATTTAAG2700.23236400251297365No Hit
CATAGACACCATGCCTGGCTAATTTTTTTGTGTTTTTGGTAGAGATGGGG2680.23064278767954421No Hit
CATAGAGCCAAGGAAAGTTGAATGGAGACAGCCGCTCACCTCTATGAGAC2640.22720035801268534No Hit
CATAGATGTCCATCATGTGGAAGCTGTCAATGGGCAAGCAATGACAGTCT2590.2228973209291118No Hit
CATAGACAATTAAATTTTCTTAAGGGGTTGACACTGACTGATACAGGAAG2430.20912760226167632No Hit
CATAGATCCTCTCATTGTCCAGTTTGGAGACAGCCGCTCACCTCTATGAG2280.19621849101095554No Hit
CATAGACCTTTGGGTTCATATCATCTGGCTACACATGGCTATGCAATCTA2270.19535788359424083No Hit
CATAGAACTTCACAAGGGCTTTAGGGACACTGACTGATACAGGAAGGCCT2250.19363666876081137No Hit
CATAGATGTCAAGAGTCTAATTCCTGCTTCCTTCTGCTGGCTATTCTATG2190.1884730242605231No Hit
CATAGACAGGGAGGCGTATAAGTGATGACACTGACTGATACAGGAAGGCC2180.18761241684380836No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTCGCAGATTTGGACCTGCG2040.1755639130098023No Hit
CATAGACACCATGCCTGGCTAATTTTTAAATATTTTGTAGAGACCGGGTT2010.17298209075965817No Hit
CATAGAGCAACAGGGACTCTCATTCAACACTGACTGATACAGGAAGGCCT2000.17212148334294344No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGGGTTCTCTAAATATACACTCA1830.15749115725879326No Hit
CATAGAGAGATTTTGGGCTGAGACGATGGCGTATTCTAAATATACAATCA1770.15232751275850495No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTCGGACCTGCG1750.15060629792507552No Hit
CATAGATGAAAGCCTGTTGAATTTATGAGACCCTTCCTAACCATGGGCAT1740.14974569050836078No Hit
CNTAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTT1730.14888508309164608No Hit
CATAGAACCTCTTTTGGGGCAAAGTTGACTGATACAGGAAGGCCTTTCTA1730.14888508309164608No Hit
CATAGATCATGGGACTTCAGCATGGCGGCGTTTGCAGATTTGGACCTGCG1700.14630326084150191No Hit
CATAGACAGAAACCACCCAGACAACCTGATTGGCCATTTGAACTCTATGA1700.14630326084150191No Hit
CATAGAGCAACAGGGACTCTCATTCACAAAGTCACGAAAGTGGGTCTATG1700.14630326084150191No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGCTTGCAGATTTGGACCTGCG1680.1445820460080725No Hit
CATAGACAGGGAGGCGTATAAGTGATGTACGGTTGCACAGATCATTTAAG1580.13597597184092533No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTCTGCAGATTTGGACCTGCG1570.13511536442421063No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGCCCTGCG1560.1342547570074959No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGATCTGCG1530.13167293475735176No Hit
CNTAGAGAGATTTTGGGCTGAGACGATGGGGTTTTCTAGATATACAACAA1530.13167293475735176No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTT1510.1299517199239223No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCCGCG1470.12650929025706342No Hit
CATAGACACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT1460.12564868284034872No Hit
CATAGAACTTCACAAGGGCTTTAGGGCACTGACTGATACAGGAAGGCCTT1430.12306686059020457No Hit
CATAGACCTTTGGGTTCATATCATCTGGATCCTTTCCCTCACTCTCTCCA1400.12048503834006041No Hit
CNTAGACACCATGCCTGGCTAATTTTTTGCGTTTTTAGTAGAGATGGGGT1400.12048503834006041No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCGGATTTGGACCTGCG1380.11876382350663098No Hit
CATAGAACTTCACAAGGGCTTTAGGGCTACACATGGCTATGCAATCTATG1330.1144607864230574No Hit
CATAGATCCCATCCAATAATAATGAACAAGCAATGGGGAAAGGATTCTAT1280.1101577493394838No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGACTTGGACCTGCG1250.10757592708933966No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGGCCTGCG1240.10671531967262493No Hit
CATAGACACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTT1230.10585471225591021No Hit
CATAGAAACCCCAAAGGCTATGTTCAGTGTACCATTTTCCCCCAAGTCAT1210.10413349742248079No Hit
CATAGATTCTGAAGAAATCAGATAGAGAGAAACACACTGACTGATACAGG1200.10327289000576607No Hit
CATAGAAAACAGAGTCACAGTCCCCAGTGACATGGTTCTACACATAGACC1180.10155167517233664No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGGTTTGGACCTGCG1180.10155167517233664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)