FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40603
Sequences flagged as poor quality0
Sequence length150
%GC36

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGCTTTTTCTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG423810.437652390217472No Hit
CATAGAGAAGACTCCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG38349.442652020786642No Hit
CATAGAAATGATGCTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG35978.858951309016575No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGTTCTGGGCCCCAGTGTGAA24906.132551781888037No Hit
CATAGACGGATTATTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC18044.443021451616875No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTGCTTGAACCAGATTCTATG16334.021870305149866No Hit
CATAGACTCATTGCACTTTCCACAACTGTCATTGTCGCTGTCCCATCTAT14803.645050858310962No Hit
CATAGATCATGGGACTTCAGCATGGCTCAGGTATGTCTTTATTAGCTCTA13253.263305667068936No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC9172.2584538088318595No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGAAGTGATGGGCTAGATCTATGA7641.881634361992956No Hit
CATAGACTCATTGCACTTTCCACAACTGTCCCAACTGTCTCTGAAAAATT7491.8446912789695342No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGGGGTAAGGCGTACTGGTCTATGA7221.7781937295273749No Hit
CATAGACCAGCAGACACTCCCATCATCAAGGAAGTTTCTGTGAGATCTAT4541.1181439795089032No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAGGAACCATGGGAGGTCTAT4111.0122404748417606No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGCTGAAGTGATGGGCTAGATCTA3810.9383543087949167No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGCTATACCACACT3630.8940226091668103No Hit
CATAGACGTGACTAAAAGCATGTTGGTGGAAGGGTAAGAGAGGGTCTATG3560.8767825037558802No Hit
CATAGATCACGTAGAAACTGGAGAGGCTAATCTGAAATCTTCGTGTTCTA3440.8472280373371426No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGCCCCAGTGTGAATACTTCT3310.8152106987168437No Hit
CATAGACCAGCAGACACTCCCATCATCAGGAACCATGGGAGGTCTATGAG3190.7856562322981061No Hit
CATAGAAAAAACAGTTGGCCAGGCATCTATACGCTATACCACACTACACA2820.694529960840332No Hit
CATAGATCAAGGAAAACACCAGCCCACACTGACGATCATTGTTCACTGCA2630.6477353890106642No Hit
CATAGAAGGACAAAGACATTTAGGACCCACACTGCCCTCTCTGCTGTTCC2570.6329581558012954No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG2560.630495283599734No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTGCCTCTAAGTAAACTGAAT2560.630495283599734No Hit
CATAGACCAGCAGACACTCCCATCATTCAGGTGGAAGGGTAAGAGAGGGT2310.5689234785606975No Hit
CATAGAAGTCACGAGTTTTGTTGTTGTTCTTCCTTTTCTGCCTTCATCTA2280.5615348619560131No Hit
CATAGACAGTGCCTTTGTGCGTGTTAGGAGAGCTTCACAACCTTGAAAGG2120.5221289067310297No Hit
CATAGAAGGACAAAGACATTTAGGACCCTGCAGTCTTTGGAGGAATCTAT1980.48764869590916926No Hit
CATAGATGTGTAGCCTGGGTCTGACATTGCTTCTTGTGGTAACTGGTCTA1730.4260768908701328No Hit
CATAGATGTGTAGCCTGGGTCTGACAAATGAGAAACCTGGATGCTTCTAT1660.40883678545920255No Hit
CATAGATCAAGGAAAACACCAGCCCAAGGGGTAAGGCGTACTGGTCTATG1640.40391104105607956No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC1630.4014481688545181No Hit
CATAGACCTCCGACAGTTTTTATGCACCCACAGCCAGGAAAGAATCTATG1600.3940595522498338No Hit
CATAGAGCTTTTTCTCCAGCCTCCAACCTGACGCTATACCACACTACACA1580.38913380784671087No Hit
CATAGACCAACATTTCTTCTCCCAGGGTGGAAGGGTAAGAGAGGGTCTAT1520.37435657463734207No Hit
CATAGATGGCCAAGATACGAGCACATTGGTTCTACAAAGGATTCTGGGCC1510.37189370243578057No Hit
CATAGAAAAAACAGTTGGCCAGGCATCTATAGAGATCCCACCATTTGCCA1480.3645050858310962No Hit
CATAGACCAGCAGACACTCCCATCATACACTGACGATCATTGTTCACTGC1450.3571164692264118No Hit
CATAGAAATGATGCTGAAGGGCCTGCACTGACGACATGGTTCTACACATA1430.3521907248232889No Hit
CATAGAGAAGACTCCCTCAACCCACCATAGCAGCATAATTTCCCATGTCA1420.34972785262172745No Hit
CATAGATCAAGGAAAACACCAGCCCACTGTGTGCTTGAACCAGATTCTAT1260.3103218973967441No Hit
CATAGAAATGATGCTGAAGGGCCTGCATAGAAATGATGCTGAAGTGATGG1220.30047040859049823No Hit
CATAGAAATGATGCTGAAGTGATGGGCTAGATCTATGAGACCAAGTCTCT1190.29308179198581386No Hit
CATAGACCTCCGACAGTTTTTATGCACTGTCCCAACTGTCTCTGAAAAAT1170.2881560475826909No Hit
CATAGATCAAGGAAAACACCAGCCCACCCACAGCCAGGAAAGAATCTATG1100.2709159421717607No Hit
CATAGAAATGATGCTGAAGGGCCTGCACATAGAAATGATGCTGAAGTGAT1090.26845306997019924No Hit
CATAGACCAGCAGACACTCCCATCATTTATTTTAAAGGACTGGAAGCCTC1060.26106445336551487No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAAGAAATCTACAAAGGATTCTGG1050.2586015811639534No Hit
CATAGACCGCTTCCCAATTTTTGTAACAACACTGCCCTCTCTGCTGTTCC1020.251212964559269No Hit
CATAGAAATGATGCTGAAGGGCCTGCACACTGACGACATGGTTCTACACA1000.24628722015614612No Hit
CATAGAAATGATGCTGAAGGGCCTGCGAAATGATGCTGAAGTGATGGGCT1000.24628722015614612No Hit
CATAGACGGATTATTCTCTCCATGGTCTGAGGAGAATTCAAGCTGCTCTA1000.24628722015614612No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAGTCACAAATGAGAAACCTGGATG940.23150998694677732No Hit
CATAGACACAACAGAGAGAACGGGCTACACTGACGCTATACCACACTACA920.22658424254365442No Hit
CATAGAAATGATGCTGAAGGGCCTGCCACTGACGACATGGTTCTACACAT860.21180700933428565No Hit
CATAGATCAAGGAAAACACCAGCCCACGCTGTCCTTCTCTGAATCTATGA860.21180700933428565No Hit
CATAGACCAACATTTCTTCTCCCAGGGTACACTGACGATCATTGTTCACT860.21180700933428565No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTGCTTCTTGTGGTAACTGGTC840.2068812649311627No Hit
CATAGACAGTGCCTTTGTGCGTGTTAATAGAGTGTCTGTTTCCCCACTCA810.19949264832647834No Hit
CATAGAAGGACAAAGACATTTAGGACCCAGGCCATTGCTTCTTGTGGTAA810.19949264832647834No Hit
CATAGAAATGATGCTGAAGGGCCTGCAGAAGTAGGAAGTATTACCCCTCT810.19949264832647834No Hit
CATAGATTGTGTGTCTCTTCTATATTAACAGTCGACATGGCTCAGGTATG790.19456690392335543No Hit
CATAGAAATGATGCTGAAGGGCCTGCAATGATGCTGAAGTGATGGGCTAG750.18471541511710957No Hit
CATAGAGTGCCTGTTTCCTCATTCGTAGTGTCTGTTTCCCCACTCAAATA700.17240105410930226No Hit
CATAGAGAAGACTCCCTCAACCCACCACATTGCTTCTTGTGGTAACTGGT680.16747530970617935No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGATGCTGAAGTGATGGGCTAGAT650.16008669310149495No Hit
CATAGAGTCCAACTATTCCAGCACCACGCTGTCCTTCTCTGAATCTATGA650.16008669310149495No Hit
CATAGATCACGTAGAAACTGGAGAGGCACTGACGACATGGTTCTACCATA650.16008669310149495No Hit
CATAGAGCTTGGGTGCGAACATCAAGGAAGTTTCTGTGAGATCTATGAGA610.15023520429524911No Hit
CATAGAAATGATGCTGAAGGGCCTGCCATAGAAATGATGCTGAAGTGATG610.15023520429524911No Hit
CATAGACCAGCAGACACTCCCATCATTTCATCAGGAACCATGGGAGGTCT610.15023520429524911No Hit
CATAGAGTGCCTGTTTCCTCATTCGTACTGACGACATGGTTCTACACATA600.14777233209368765No Hit
CATAGAAATGATGCTGAAGGGCCTGCGAGCAGCATAATTTCCCATGTCAT580.14284658769056474No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCAGAAGTAGGAAGTATTACCCCT570.14038371548900327No Hit
CATAGACATTTAATCCTCACAATGACCCATACACTGACGATCATTGTTCA560.1379208432874418No Hit
CATAGAAATGATGCTGAAGGGCCTGGATGCTGAAGTGATGGGCTAGATCT540.13299509888431887No Hit
CATAGAAATGATGCTGAAGGGCCTGCCATGGTTCTACACATAGAAATGAT530.13053222668275744No Hit
CATAGACCTAAAAGGCTATTGAAAGGAAGGCTAATCTGAAATCTTCGTGT520.12806935448119597No Hit
CATAGAGTGCCTGTTTCCTCATTCGTCTGTTTCCCCACTCAAATACCATC480.11821786567495013No Hit
CATAGAAATGATGCTGAAGGGCCTGCTCTACACATAGAAATGATGCTGAA450.11082924907026574No Hit
CATAGAGCTTGGGTGCGAACATCAACCCACCCACAGCCAGGAAAGAATCT440.10836637686870428No Hit
CATAGACCCAAGACCCCAGCCTTTACATTTTTGTCATGCCCTACTTCCTT440.10836637686870428No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTCTGTCCCAACTGTCTCTGA430.10590350466714282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)