FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40437
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA1200929.698048816677797No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCA418710.354378415807306No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTTGTATATCT18344.535450206494052No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTCTACT12143.0022009545713084No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGGTCAGGAGATTGAGACCATCCTG11792.915646561317605No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAAGCCCTTGTGAAGTTCTAT10372.564483022974009No Hit
CATAGATTGCATAGCCATGTGTAGCCCCTAAGCCCAGGTCTATGTGTAGA9122.2553601899250686No Hit
CATAGATTGCATAGCCATGTATAGCCCCTAAGCCCAGGTCTATGTGTAGA8282.0476296461161807No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGTAG7451.8423720849716843No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGCTCATTATTATTGGATGGGA6401.5827089052105745No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAGCCCAGGTCTAT4151.0262878057224818No Hit
CATAGAATCCTTTCCCCATTGCTTGCTCATTATTATTGGATGGGATCTAT3940.9743551697702598No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGAAAG3290.8136112965848109No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCATGATTGT2890.7146919900091501No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCAC2700.6677053193857111No Hit
CATAGACCTCCTGTTTGACCATTTTGAACATAGCCTTTGGGGTTTCTATG2460.6083537354403146No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGAGATTATAGGTACTAATTTT2420.5984618047827485No Hit
CATAGACTGCCTCAGCCTCCTGAGTAACTGGAACCACAGGCATGTGCCAC2250.5564210994880926No Hit
CATAGATTGAGCTTAAATGATCTGTGCAACCGTAACTGGGGACTGTGACT1970.4871775848851299No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTCAAA1700.42040705294655883No Hit
CATAGAGGTGAGCGGCTGTCTCCAGATGATATGAACCCAAAGGTCTATGT1670.4129881049533842No Hit
CATAGACTGTCATTGCTTGCCCATTGCTCATTATTATTGGATGGGATCTA1620.4006231916314267No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCAC1600.3956772263026436No Hit
CATAGAGGTGAGCGGCTGTCTCCATTCAACTTTCCTTGGCTCTATGTGTA1530.37836634765190297No Hit
CATAGAAAGGCCTTCCTGTATCAGTCAGTGTTCATAAATTCAACAGGCTT1450.35858248633677076No Hit
CATAGAATAGCCAGCAGAAGGAAGCAGGAATTAGACTCTTGACATCTATG1450.35858248633677076No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTAATACAAAAAATTAG1440.35610950367237926No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTTCCACATGATGGACATCTA1330.32890669436407255No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCACC1270.3140687983777234No Hit
CATAGAATCCTTTCCCCATTGCTTGTTCATTATTATTGGATGGGATCTAT1220.30170388505576573No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCTAT1210.29923090239137423No Hit
CATAGACTGTCATTGCTTGCCCATTGGAAGTTAGGAAGCCAGCTCTATGT1200.29675791972698273No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCGCATGCTTG1190.2942849370625912No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGCCCGGCTACTG1170.2893389717338081No Hit
CATAGATTGCATAGCCATGTGTAGCCAGATGATATGAACCCAAAGGTCTA1130.279447041076242No Hit
CATAGACCAGACTTTTGAAAGAAGCACACAAAAAGGGCATCTATGTGGAA1050.25966317976110986No Hit
CATAGACTGTCATTGCTTGCCCATTGCTTGTTTTTCTCAGGTTTGTTGTA1020.2522442317679353No Hit
CATAGACATGCTAACATTTCTGGGGATACATTACTGGGGACTGTGACTCT1010.2497712491035438No Hit
CATAGACATGCTAACATTTCTGGGGATACTGGGGACTGTGACTCTGTTTT1000.24729826643915226No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAACATGGTG1000.24729826643915226No Hit
CATAGACCAGACTTTTGAAAGAAGCACATGGAAGTACACAAAAAGGGCAT920.22751440512402007No Hit
CATAGATGGAGAGAGTGAGGGAAAGGATCCAGATGATATGAACCCAAAGG920.22751440512402007No Hit
CATAGACCATCCAGAGGTAATTCTGCTCATTATTATTGGATGGGATCTAT820.20278457848010487No Hit
CATAGATATGCCCATGGTTAGGAAGGCAGCTCTATGTGTAGAACTTGGAA810.20031159581571334No Hit
CATAGATTGCATAGCCATGTGTAGCCCTAAAGCCCTTGTGAAGTTCTATG800.1978386131513218No Hit
CATAGACTGTCATTGCTTGCCCATTGTTGGAAGTTAGGAAGCCAGCTCTA800.1978386131513218No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCA770.19041966515814726No Hit
CATAGACTGTCATTGCTTGCCCATTGTTTGGAAGTTAGGAAGCCAGCTCT760.18794668249375573No Hit
CATAGACATGCTAACATTTCTGGGGATAACATTACTGGGGACTGTGACTC760.18794668249375573No Hit
CATAGACATGCTAACATTTCTGGGGATAGACATGCTAACATTACTGGGGA740.18300071716497268No Hit
CATAGACATGCTAACATTTCTGGGGATACTAACATTACTGGGGACTGTGA730.18052773450058116No Hit
CATAGACCATCCAGAGGTAATTCTGCTAGACCAACTCAGATGGGATCCTC720.17805475183618963No Hit
CATAGAATCCTTTCCCCATTGCTTGTTGTCTGTGACAGCTTGTATACATC640.15827089052105744No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAGGAAGTCAAATTGTCC640.15827089052105744No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCGGGTCA620.1533249251922744No Hit
CATAGAGGTGAGCGGCTGTCTCCAAGTCCGCGCAGAGCCTTCAGGTCAGA600.14837895986349137No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGATCACAAATGCACACCAC590.14590597719909984No Hit
CATAGATATGCCCATGGTTAGGAAGGTTGTCTGGGTGGTTTCTGTCTATG590.14590597719909984No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCGGAGCCTTCAGGTCA570.1409600118703168No Hit
CATAGAATCCTTTCCCCATTGCTTGTTACGGGAGCAGGAATTAGACTCTT570.1409600118703168No Hit
CATAGACATGCTAACATTTCTGGGGATTGTGACTCTGTTTTCTATGTGTA530.1310680812127507No Hit
CATAGAAGTTCTGATCCACATTCACGTATAGCCCCTAAAGCCCTTGTGAA530.1310680812127507No Hit
CATAGAAGCAGGATGAAAACATGGTACATCTATGTGTAGAACCATGTCGT530.1310680812127507No Hit
CATAGATTTAAAATAAAATTCCTGGATAGATCATTTAACTGGGGACTGTG510.12612211588396766No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAATTTGTTAAAAGAGG510.12612211588396766No Hit
CATAGACCCACTTTCGTGACTTTGTGTAGAACCTCGTCTCAGCCCAAAAT500.12364913321957613No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGGGCCTTCAGGTCA500.12364913321957613No Hit
CATAGATTGCATAGCCATGTGTAGCCATGCTGAAGTCCCATGATCTATGT500.12364913321957613No Hit
CATAGACTGCCTCAGCCTCCTGAGTAGCTGGGACTCTAGGTGTGCACCAC480.11870316789079308No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGCCA460.11375720256201004No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCG460.11375720256201004No Hit
CATAGAGGTGAGCGGCTGTCTCCACAGGTCCGCGCAGAGCCTTCAGGTCA460.11375720256201004No Hit
CATAGAATCCTTTCCCCATTGCTTGTAGATTGGAAGTTAGGAAGCCAGCT420.10386527190444396No Hit
CATAGAATCCTTTCCCCATTGCTTGTTTTTGTCAAGAAGTCAAATTGTCC410.10139228924005243No Hit
CATAGAAGCAGGATGAAAACATGGTACATTACTGGGGACTGTGACTCTGT410.10139228924005243No Hit
CATAAATTCAACAGGCTTTCATCTATGTGTAGAACCATGTCGTCAGTGTA410.10139228924005243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)