FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175250
Sequences flagged as poor quality0
Sequence length150
%GC35

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGAGCTTGGGTGCGAACATCAAGGAAGTTTCTGTGAGATCTATGAGA161429.210841654778887No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC139107.937232524964337No Hit
CATAGACGGATTATTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC137617.852211126961484No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG120026.848502139800286No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC118046.735520684736092No Hit
CATAGAGAAGACTCCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG111256.348074179743223No Hit
CATAGATCATGGGACTTCAGCATGGCTCAGGTATGTCTTTATTAGCTCTA71624.086733238231099No Hit
CATAGAAATGATGCTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG67183.833380884450784No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGTTCTGGGCCCCAGTGTGAA51382.931811697574893No Hit
CATAGACTCATTGCACTTTCCACAACTGTGTGCTTGAACCAGATTCTATG50342.8724679029957203No Hit
CATAGACTCATTGCACTTTCCACAACTGTCCCAACTGTCTCTGAAAAATT45072.571754636233951No Hit
CATAGAAGTCACGAGTTTTGTTGTTGTTCTTCCTTTTCTGCCTTCATCTA41082.344079885877318No Hit
CATAGAAAATTTGTGATGGTAAATCATGGGACATGCCAGGAATCAATGTT40852.3309557774607703No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGAAGTGATGGGCTAGATCTATGA38922.220827389443652No Hit
CATAGATCAAGGAAAACACCAGCCCACGCTGTCCTTCTCTGAATCTATGA24051.3723252496433667No Hit
CATAGAAGGACAAAGACATTTAGGACCCACGCTGTCCTTCTCTGAATCTA21161.2074179743223965No Hit
CATAGAGGAGGTGAAAGAAATCTACAATGGGCCCCAGTGTGAATACTTCT19771.1281027104136947No Hit
CATAGACTCATTGCACTTTCCACAACTGTCATTGTCGCTGTCCCATCTAT19641.1206847360912982No Hit
CATAGATCACGTAGAAACTGGAGAGGCTAATCTGAAATCTTCGTGTTCTA19251.0984308131241083No Hit
CATAGAAGCTGAGAAGACTTCCTAATGCAGAAGTAGGAAGTATTACCCCT17721.011126961483595No Hit
CATAGAAATGATGCTGAAGGGCCTGTTTCCCCACTCAAATACCATCTATG15400.8787446504992867No Hit
CATAGACTCATTGCACTTTCCACAACTGTCTGCCTCTAAGTAAACTGAAT8710.4970042796005706No Hit
CATAGACCAGCAGACACTCCCATCATTTATTTTAAAGGACTGGAAGCCTC8380.4781740370898716No Hit
CATAGAGTCTGAATGGTGGGAGAGTGATAGGCTTAGAGGGCTTGCTCTAT8310.4741797432239658No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAAAGAAATCTACAAAGGATTCTGG8060.4599144079885878No Hit
CATAGACCTCCGACAGTTTTTATGCACCTTCATTGTTGCTCTATGAGACC6870.39201141226818825No Hit
CATAGAAATGATGCTGAAGGGCCTGCTGCTGAAGTGATGGGCTAGATCTA6850.39087018544935803No Hit
CATAGATTGTGTGTCTCTTCTATATTAACAGTCCACATAGAGATCCCACC6340.3617689015691869No Hit
CATAGACCAGCAGACACTCCCATCATGAAGAGATCCCACCATTTGCCATC6310.3600570613409415No Hit
CATAGAAAAAACAGTTGGCCAGGCATGGCTCAGGTATGTCTTTATTAGCT6040.34465049928673325No Hit
CATAGACCCAAGACCCCAGCCTTTACACACTGCCCTCTCTGCTGTTCCTT5860.3343794579172611No Hit
CATAGAAGGACAAAGACATTTAGGACCCATGATGCTGAAGTGATGGGCTA5370.3064194008559201No Hit
CATAGACTCATTGCACTTTCCACAACTGTTCTTCCTTTTCTGCCTTCATC4850.27674750356633376No Hit
CATAGATGTTTTATCAAAGGCATGCTCATTGCTTCTTGTGGTAACTGGTC4590.26191155492154067No Hit
CATAGAGCTTGGGCGCGAACATCAAGGAAGTTTCTGTGAGATCTATGAGA4330.2470756062767475No Hit
CATAGATGTTTTATCAAAGGCATGCTCATCAGGAACCATGGGAGGTCTAT4330.2470756062767475No Hit
CATAGATCATGGGACTTCAGCATGGCGGTGTTTGCAGATTTGGACCTGCG4080.23281027104136948No Hit
CATAGATGTGTAGCCTGGGTCTGACATGCCAGGAATCAATGTTCTATGAG3730.21283880171184022No Hit
CATAGATGTTTTACCAAAGGCATGCTCATCAAGGAAGTTTCTGTGAGATC3730.21283880171184022No Hit
CATAGACGGATTACTCTCTCCATGGTCTACCAGTTATTAGTTGAATGAGC3720.21226818830242508No Hit
CATAGACCAGCAGACACTCCCATCATCAAGGAAGTTTCTGTGAGATCTAT3690.21055634807417975No Hit
CATAGAAGGACAAAGACATTTAGGACCCATGGTCTACCAGTTATTAGTTG3100.1768901569186876No Hit
CATAGAGCTTTTTTTCCAGCCTCCAAGTAATAACCAGGCCCCTCTATGAG3060.1746077032810271No Hit
CATAGACCAACATTTCTTCTCCCAGGGTCTCCCAAGTATTAGAGCAAGTT3030.17289586305278173No Hit
CATAGAGAAGACTTCCTCAACCCACCCACAGCCAGGAAAGAATCTATGAG3020.17232524964336662No Hit
CATAGATGTTTTACCAAAGGCATGCTCATTTATTTTAAAGGACTGGAAGC3000.17118402282453637No Hit
CATAGACCTCCGACAGTTTTTATGCACTGTCCCAACTGTCTCTGAAAAAT2450.1398002853067047No Hit
CATAGAGCTTGGGTGCGAACATCAACTGGTCTACAAAGGATTCTGGGCCA2390.13637660485021397No Hit
CATAGATCAAGGAAAACACCAGCCCACCCACAGCCAGGAAAGAATCTATG2220.12667617689015692No Hit
CATAGACCAGCAGACACTCCCATCATACACTGACGATCATTGTTCACTGC2200.12553495007132667No Hit
CATAGAAATGATGCTGAAGTGATGGGCTAGATCTATGAGACCAAGTCTCT2160.1232524964336662No Hit
CATAGAGCTGTACTGCATCTTTTCTCAAACTGCTGGGGTTGCTCTATGAG2100.11982881597717547No Hit
CATAGAGAAGACTCCCTCAACCCACGCTGTCCTTCTCTGAATCTATGAGA1970.11241084165477888No Hit
CATAGAGCTTTTTCTCCAGCCTCCAAGGGGTAAGGCGTACTGGTCTATGA1910.10898716119828815No Hit
CATAGAAATGATGTTGAAGGGCCTGCCCTCTCTGCTGTTCCTTCTATGAG1860.10613409415121254No Hit
CATAGAGTCTGAATGGTGGGAGAGTGAGGAGCTGAGTCATGGGGTCTATG1800.10271041369472184No Hit
CATAGAAATGATGCTGAAGGGCCTGCACATAGAAATGATGCTGAAGTGAT1790.10213980028530671No Hit
CATAGACTCATTGCACTTTCCACAACTGTACACTGACGCTATACCACACT1760.10042796005706135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)