FastQCFastQC Report
Wed 28 Jun 2023
EGAF00005808457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005808457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175250
Sequences flagged as poor quality0
Sequence length150
%GC33

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGATCTCACAGAAACTTCCTTGATGTTCGCACCCAAGCTCTATGTGT165589.448216833095579No Hit
CATAGATCTCACAGAAACTTCCTTGATGAGCATGCCTTTGATAAAACATC144888.267047075606277No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGAGAGAATAATCCG141848.093580599144081No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGAGCATGCCTTTGATAAAAC122366.982025677603423No Hit
CATAGAGGGGCCTGGTTATTACTTGGAGGCTGGAGAAAAAGCTCTATGTG122076.965477888730385No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGTTGAGGGAGTCTTCTCTATGTG111506.3623395149786015No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCTGAAGTCCCATGATCTA72054.111269614835948No Hit
CATAGAAGGAACAGCAGAGAGGGCAGGCCCTTCAGCATCATTTCTATGTG68853.92867332382311No Hit
CATAGAATCTGGTTCAAGCACACAGTTGTGGAAAGTGCAATGAGTCTATG51852.9586305278174034No Hit
CATAGAAGTATTCACACTGGGGCCCAGAACCCATTGTAGATTTCTTTCAC51062.913552068473609No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTTGTGGAAAGTGCAATGAG45502.596291012838802No Hit
CATAGAACATTGATTCCTGGCATGTCCCATGATTTACCATCACAAATTTT42122.403423680456491No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAACAACAAAACTCGTGACTTCTA41602.3737517831669046No Hit
CATAGATCTAGCCCATCACTTCAGCAGGCCCTTCAGCATCATTTCTATGT39882.2756062767475034No Hit
CATAGATTCAGAGAAGGACAGCGTGGGCTGGTGTTTTCCTTGATCTATGT23981.3683309557774608No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTCCTAAATGTCTTTGTCCTTCTA21111.204564907275321No Hit
CATAGATGGGACAGCGACAATGACAGTTGTGGAAAGTGCAATGAGTCTAT20101.1469329529243937No Hit
CATAGAAGTATTCACACTGGGGCCCATTGTAGATTTCTTTCACCTCCTCT19551.115549215406562No Hit
CATAGAACACGAAGATTTCAGATTAGCCTCTCCAGTTTCTACGTGATCTA19081.0887303851640515No Hit
CATAGAGGGGTAATACTTCCTACTTCTGCATTAGGAAGTCTTCTCAGCTT17711.0105563480741797No Hit
CATAGATGGTATTTGAGTGGGGAAACAGGCCCTTCAGCATCATTTCTATG15730.8975748930099857No Hit
CATAGATTCAGTTTACTTAGAGGCAGACAGTTGTGGAAAGTGCAATGAGT8870.5061340941512126No Hit
CATAGAGCAAGCCCTCTAAGCCTATCACTCTCCCACCATTCAGACTCTAT8580.48958630527817404No Hit
CATAGAGGCTTCCAGTCCTTTAAAATAAATGATGGGAGTGTCTGCTGGTC8290.4730385164051355No Hit
CATAGATGGCCCAGAATCCTTTGTAGATTTCTTTCACTCTCCCACCATTC8240.47018544935805995No Hit
CATAGATCTAGCCCATCACTTCAGCAGCAGGCCCTTCAGCATCATTTCTA7190.4102710413694722No Hit
CATAGAGCAACAATGAAGGTGCATAAAAACTGTCGGAGGTCTATGTGTAG6910.39429386590584875No Hit
CATAGATGGCAAATGGTGGGATCTCTATGTGGACTGTTAATATAGAAGAG6510.37146932952924394No Hit
CATAGATGGCAAATGGTGGGATCTCTTCATGATGGGAGTGTCTGCTGGTC6210.3543509272467903No Hit
CATAGAGCTAATAAAGACATACCTGAGCCATGCCTGGCCAACTGTTTTTT5990.34179743223965764No Hit
CATAGAAGGAACAGCAGAGAGGGCAGTGTGTAAAGGCTGGGGTCTTGGGT5960.3400855920114123No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGTAGAACCATGT5780.3298145506419401No Hit
CATAGATCTAGCCCATCACTTCAGCATCATGGGTCCTAAATGTCTTTGTC5360.30584878744650495No Hit
CATAGATGAAGGCAGAAAAGGAAGAACAGTTGTGGAAAGTGCAATGAGTC4990.2847360912981455No Hit
CATAGACCAGTTACCACAAGAAGCAATGAGCATGCCTTTGATAAAACATC4870.27788873038516404No Hit
CATAGACCTCCCATGGTTCCTGATGAGCATGCCTTTGATAAAACATCTAT4220.2407988587731812No Hit
CATAGAGGTGAGCGGCTGTCTCCACAAGTCCGCGCAGAGCCTTCAGGTCA3860.2202567760342368No Hit
CATAGAACATTGATTCCTGGCATGTCAGACCCAGGCTACACATCTATGTG3820.2179743223965763No Hit
CATAGATCTCACAGAAACTTCCTTGATGATGGGAGTGTCTGCTGGTCTAT3680.2099857346647646No Hit
CATAGAACAACTTGCTCTAATACTTGGGAGACCCTGGGAGAAGAAATGTT3180.18145506419400856No Hit
CATAGAGCTCATTCAACTAATAACTGGTAGACCATGGGTCCTAAATGTCT3070.1751783166904422No Hit
CATAGAAATTTTTCAGAGACAGTTGGGACAGTGCATAAAAACTGTCGGAG2560.14607703281027104No Hit
CATAGATGGCCCAGAATCCTTTGTAGACCAGTTGATGTTCGCACCCAAGC2460.14037089871611982No Hit
CATAGAGGCTGCAGTGAACAATGATCGTCAGTGTATGATGGGAGTGTCTG2220.12667617689015692No Hit
CATAGATTCTTTCCTGGCTGTGGGTGGGCTGGTGTTTTCCTTGATCTATG2150.12268188302425108No Hit
CATAGAGCAACCCCAGCAGTTTGAGAAAAGATGCAGTACAGCTCTATGTG2140.12211126961483595No Hit
CATAGATTCAGAGAAGGACAGCGTGGGTTGAGGGAGTCTTCTCTATGTGT1990.11355206847360913No Hit
CATAGACCAGTACGCCTTACCCCTTGGAGGCTGGAGAAAAAGCTCTATGT1890.10784593437945791No Hit
CATAGACCCCATGACTCAGCTCCTCACTCTCCCACCATTCAGACTCTATG1820.10385164051355206No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGGCAGGCCCTTCAG1810.10328102710413696No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCCAGGCCCTTCAGCATCA1800.10271041369472184No Hit
CATAGATCTAGCCCATCACTTCAGCATCATTTCTATGTGCAGGCCCTTCA1790.10213980028530671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)