FastQCFastQC Report
Sat 4 Feb 2023
EGAF00005810018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005810018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8289394
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGGATCTCGTATGCCGT99670.12023798120827651TruSeq Adapter, Index 18 (97% over 35bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG89320.10775214690000258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)