FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006011621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006011621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39250859
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG567310.1445344164314977No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT462820.11791334299206038No Hit
CTTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGGCGGCCGCCCCCTCGCC451510.1150318773915241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)