FastQCFastQC Report
Sat 18 Jun 2022
EGAF00006011693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006011693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40272797
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT968360.24045014802423584No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC716250.17784957920851638No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA473820.11765261796939507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)