EGAF00006011779 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006011779
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74404147
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	835635	1.1231027216802847	No Hit
CCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	293037	0.3938449828609688	No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	197370	0.2652674722552763	No Hit
CCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	146133	0.19640437514860565	No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127422	0.17125658331920668	No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122176	0.16420590105011215	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88865	0.11943554705358021	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCCCTTT	280985	32.361073	7
CCCTTTT	296995	31.187767	8
CCCCCTT	264445	30.775295	6
CCTTTTT	317295	29.518421	9
CCCCCCT	255045	28.221624	5
CTTTTTT	380915	25.092014	10
TCCCCCT	68740	14.722257	5
TCCCCTT	68120	14.666125	6
CTCCCCT	75235	12.990823	5
GTACGCA	9660	12.38927	50
ACGCACG	10175	11.932507	52
CTCCCCC	87055	11.834166	4
CCCCCCC	1118065	11.666816	1
TTCGTCG	8695	11.432072	38
TAGCGTA	5880	11.428823	37
CCGGTAC	10745	11.398726	60
CGGTACA	11000	11.102633	61
GCCGGTA	11280	11.04482	59
CCCCCTC	95305	10.874843	1
ATAGCGT	6525	10.567275	36