FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47408017
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGTCT107750.020.2059351
GGGGGTT229500.019.4036081
GTCGGTT345800.018.099571
GGGGGGA318000.017.2123871
GGGGGGT214950.016.7792721
GTCCGCT69250.016.7722931
GGCGGTT74750.016.4818251
GTTTGCG183600.016.3888075
GGGCGGT185750.016.2019181
GCGCCTT132450.015.9407821
TTTGCGG193650.015.9260656
CGTCAAT257800.015.8415913
CCCCCGT205600.015.6211421
CCCCACT730150.015.45661451
CATCGCA188500.015.0164276
AATCGCA208550.015.01540746-47
GAGTACG80200.014.9839149
GGGGGAT262600.014.8448231
AACGTAT449950.014.6683656
CGTATTC469050.014.6414618
Produced by FastQC (version 0.11.5)