FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47408017
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCC497500.018.0507728
GGGTTAA511450.017.7480954
GTTGGGT615450.016.674181
TTAAGTC576000.016.1213027
AAGTCCC583150.015.697779
GGTTAAG692800.015.0323165
GTTAAGT649450.014.6890336
GGGAGAT469050.014.3913881
TGGGTTA643750.014.23634053
TTGGGTT722750.013.7165412
GGCGATC107800.013.5869582
GGGCGAT119800.013.4963441
GGGGAAT353300.012.9821921
GCAACGA360700.012.54586516-17
GAGATAC250750.012.3958353
CCGCAAC376550.012.21106814-15
CGCAACC411100.012.05780324-25
AACGAGC408750.011.98475518-19
ACGAGCG405950.011.26330918-19
ATACCAT251800.011.2221376
Produced by FastQC (version 0.11.5)