FastQCFastQC Report
Wed 27 Apr 2022
EGAF00006040557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29681464
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGG3968821.3371375482018004No Hit
GTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAG3064111.03233115455491No Hit
GTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAG2806960.9456945924230692No Hit
GAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAGGCGTT1540310.5189467743235306No Hit
CTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAGGCGTTCAGG1434200.4831971900038354No Hit
GTCGTAATCAATGCAAGTTAGTGACTCACACTTACTAGGAGTTCCGAGTT1165790.3927670144572384No Hit
GCGGTTATGAGTACGACCGGGCGTGAACGGTACTCGGTCCTCCGGATTTT1056770.35603702027635836No Hit
ATGACCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCAC838240.2824119457180414No Hit
CCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCT801770.2701248159457364No Hit
CCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAGGCGTTCAG713510.24038908592918462No Hit
TGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTA688030.2318046037082268No Hit
CCACCGTTGATCGGATATATATCGAAATCTTGCCTTGCGGCAAGTGATGC672890.22670377714522436No Hit
ACAGGCTATTGAGAATTTGCGTATCCCTTTCATAGATTTTCAAGGTCCAA631000.21259059189263713No Hit
GCGTATCCCTTTCATAGATTTTCAAGGTCCAAGGAGAGGGTACCGACACA621100.20925517690097767No Hit
GCGGATTCGGTACAGGCTATTGAGAATTTGCGTATCCCTTTCATAGATTT606920.20447778451898463No Hit
GACGGGTCCAAAAGGTATCCCAAATTTAACCACCGTTGATCGGATATATA605530.20400947877773143No Hit
CAGGCTATTGAGAATTTGCGTATCCCTTTCATAGATTTTCAAGGTCCAAG596980.2011288931031165No Hit
GGAGTGTACAGAAGCCTTAAATGTCACGCATCATTAATCATCATACAATC579550.19525654125416456No Hit
AGGCTATTGAGAATTTGCGTATCCCTTTCATAGATTTTCAAGGTCCAAGG566300.1907924757350244No Hit
GAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAGGC546380.18408121647907932No Hit
CACCGTTGATCGGATATATATCGAAATCTTGCCTTGCGGCAAGTGATGCC534630.18012251686776637No Hit
CCCGTCCATTATGACCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTT526320.17732278973840374No Hit
CGTTGATCGGATATATATCGAAATCTTGCCTTGCGGCAAGTGATGCCGAA512740.1727475437195416No Hit
GGCTCTAACAATGCATTATCCATGATTGACTATAAACAATATCAAGTTGT508460.17130556632920801No Hit
GGCCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGG459330.15475314829484152No Hit
GCTCTAACAATGCATTATCCATGATTGACTATAAACAATATCAAGTTGTT457800.1542376750688578No Hit
GTCCAAAAGGTATCCCAAATTTAACCACCGTTGATCGGATATATATCGAA451480.15210840004387924No Hit
GGCACGGCTACGACCTTAGAGGCGTTCAGGCATAATCCGGCAAACGTAGC438430.1477117166457827No Hit
GTACAGGCTATTGAGAATTTGCGTATCCCTTTCATAGATTTTCAAGGTCC413730.13939002469689502No Hit
CAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGCTA410440.13828158880572736No Hit
GCCTTTGAAGAACTGTTGTTCTGGCACGGCTACGACCTTAGAGGCGTTCA402970.13576486658474798No Hit
CTTTCATAGATTTTCAAGGTCCAAGGAGAGGGTACCGACACAGCAATTTA401460.1352561315708686No Hit
GTATCCCTTTCATAGATTTTCAAGGTCCAAGGAGAGGGTACCGACACAGC375220.126415597289945No Hit
GTCCATTATGACCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTT375100.12637516801731882No Hit
CCCAAATTTAACCACCGTTGATCGGATATATATCGAAATCTTGCCTTGCG371410.12513196788406394No Hit
GCCGCATTCAAGCTGGACTTAAATATGATGGTTATATGTGCAAGAAAGTT368480.12414481981077484No Hit
CAGGGTCGTAATCAATGCAAGTTAGTGACTCACACTTACTAGGAGTTCCG340090.11457992772863225No Hit
TGCGTATCCCTTTCATAGATTTTCAAGGTCCAAGGAGAGGGTACCGACAC325820.1097722133921696No Hit
CGGGTCCAAAAGGTATCCCAAATTTAACCACCGTTGATCGGATATATATC302870.10204011500241364No Hit
ACCAATACAGTGTGTGAAGAGCCTTTGAAGAACTGTTGTTCTGGCACGGC297920.10037240750658391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)