FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42598785
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG750350.08.025245120
CGTATGC550850.07.991093120
AGTCACG1950550.07.890889120
CGTCTGA4411100.07.880918120
TATGCCG485300.07.879263120
TCGTATG594100.07.855328120
GTCACGT1832600.07.7120094120
ACGTCTG4738850.07.6471815120
TCTCGTA678700.07.594831120
ACGTGGC1586900.07.5323954120
ACACGTC5357150.07.5154457120
CTCGTAT622500.07.467928120
TCCAGTC2691300.07.450824120
CACGTCT5072800.07.444083120
ATGCCGT510500.07.4077454120
TCTGAAC4097100.07.4016976120
TCACGTG1758400.07.3833466120
CACACGT5754950.07.343346120
CACGTGG1762250.07.2988744120
GTCTGAA4376800.07.2850313120
Produced by FastQC (version 0.11.5)