FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42598785
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG131500.013.089187120
CGCCGTA541600.08.127817120
CGTATCA453500.08.014046120
GTGTAGG4460000.07.7346478120
GAGTGTA2146300.07.7344995120
CGTGTAG4642750.07.706629120
CCGTATC493100.07.638026120
TAGATCT1568200.07.6333575120
GTAGGGA3932950.07.632067120
AGTGTAG2035600.07.6130133120
TAGGGAA3726750.07.5667415120
TCGTGTA4911150.07.562657120
GTCGTGT5255250.07.541073120
GTAGATC1778200.07.490735120
TGTAGGG4221650.07.4596133120
CGTCGTG5599350.07.455736120
AAGAGTG2714550.07.4387813120
AGAGTGT2474900.07.427272120
GCCGTAT509450.07.369352120
GTGGTCG854850.07.36641120
Produced by FastQC (version 0.11.5)