FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21500544
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC264500.011.227076120
CGTCTGA201300.011.116093120
CACACGT317250.010.059979120
GCACACG348200.09.941093120
CGGAAGA644400.09.56097120
AGATCGG807000.09.515323120
ACGTCTG234200.09.452062120
CACGTCT265100.09.368666120
ATCGGAA690150.09.344415120
GATCGGA735050.09.287791120
TCGGAAG667950.08.658052120
AGAGCAC558850.08.491185120
AGCACAC489950.08.375128120
TAGATCG102700.08.11954120
GAGATCG360850.07.9467273120
CAGATCG307350.07.8075337120
AAGATCG258800.07.7886486120
GAGCACA544750.07.3674297120
AGTCACG81600.07.1312995120
AAGAGCA711950.07.128661120
Produced by FastQC (version 0.11.5)