FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77262263
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAAAT725600.06.94373751
CAAAAAT799250.06.70963341
CTAAAAT495050.06.52234031
AAATCCA668950.06.3162784
CTTAAAT384000.06.30335571
TGAAATC511850.06.2898912
CTGAGAT731600.06.1030331
CTCAAAT445200.06.08083341
CAAAAAC645150.06.05391171
CTGATTT629300.06.0122071
CTGAATT545250.05.9390821
CTGGAAT702500.05.8808261
GAAAATC535350.05.8733182
AAAATCC548350.05.76836163
CTGGGAT1244750.05.72417451
GAAATCC482950.05.7222973
CTAAAAC345500.05.68622451
TTAAATC357850.05.6475832
GGAAAAT743100.05.6417441
AAATCTA391850.05.62533244
Produced by FastQC (version 0.11.5)