FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42586290
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG1648900.010.38167120
TCGTGTA1764250.010.025874120
AGCGTCG2477400.09.691635120
GTCGTGT1939750.09.68155120
GTGTAGG1623050.09.637919120
CGTCGTG2097000.09.576231120
GAGCGTC2762600.09.305544120
GCGTCGT2252850.09.174673120
GTAGGGA1403200.08.967957120
AGAGCGT2972450.08.914946120
TAGGGAA1324350.08.876891120
AAGAGCG3268650.08.8484335120
TGTAGGG1569150.08.661698120
GCGTCGG114300.08.343697120
GAGTGTA680950.08.20934120
CGGAAGA4169000.08.192061120
ATCGGAA4611050.08.161167120
TCGGAAG4392600.08.134176120
GATCGGA4931550.08.1270075120
AGTGTAG664750.07.9763007120
Produced by FastQC (version 0.11.5)