FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71973047
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG149550.064.83517594
GAAGTCG272300.030.3437494
CAAGTCG154300.027.5359794
AAAGTCG134650.021.39695794
CTAAGTC262900.013.64054894
ATAAGTC243800.011.64397194
TTAAGTC280750.08.30347394
GTAAGTC269450.06.157357794
GGAAGTC541300.05.843525494
ACAAGTC320350.05.29639594
TCTAAGT299850.05.094214494
AGAAGTC627950.05.089577794
Produced by FastQC (version 0.11.5)