FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71973047
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG150800.064.8587694
GAAGTCG278300.027.54473794
CAAGTCG171200.026.10806394
AAAGTCG143600.019.37604594
CTAAGTC262600.013.08339894
ATAAGTC244100.012.61163594
TTAAGTC285950.09.35233594
GTAAGTC277900.05.98704694
GGAAGTC543350.05.613877394
AGAAGTC623450.05.11123694
ACAAGTC325200.05.05842694
ACTAAGT205350.05.012418394
Produced by FastQC (version 0.11.5)