EGAF00006040605 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00006040605
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22330014
Sequences flagged as poor quality	0
Sequence length	126
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	29870	0.0	10.322902	120
ATCGGAA	28340	0.0	9.588976	120
AGATCGG	33550	0.0	9.351539	120
TCGGAAG	30180	0.0	8.944729	120
CGGAAGA	30650	0.0	8.905428	120
TAGATCG	5605	0.0	8.241173	120
ACACGTC	12865	0.0	7.7870817	118-119
GAGATCG	19205	0.0	7.403003	120
ACGTCTG	12760	0.0	7.3811307	120
CAGATCG	14640	0.0	7.2937827	120
CACGTCT	14920	0.0	7.2775235	120
CGTCTGA	10385	0.0	7.105138	120
CACACGT	17005	0.0	6.7379937	120
AAGATCG	13590	0.0	6.5330524	120
GCACACG	18870	0.0	6.485331	120
AGAGCAC	33000	0.0	5.271788	120