FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67926666
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG178150.069.0423894
GAAGTCG282700.035.1627294
CAAGTCG156400.031.28324794
AAAGTCG131700.026.15869394
CTAAGTC263150.017.71765194
ATAAGTC250550.015.04450294
TTAAGTC287200.011.6845494
AGAAGTC609450.07.07949894
GGAAGTC508000.07.01299394
ACTAAGT203250.07.00664294
TCTAAGT290200.06.47829194
GCTAAGT199050.06.37528394
ACAAGTC303250.06.21500494
GTAAGTC280750.06.177382594
GATAAGT212900.05.69563294
CCTAAGT227650.05.533055394
TGAAGTC610350.05.066929394
Produced by FastQC (version 0.11.5)