FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67926666
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG179000.067.6117394
GAAGTCG297450.032.86602894
CAAGTCG177450.029.26739794
AAAGTCG140400.021.9935994
CTAAGTC277750.016.63402494
ATAAGTC255200.014.19945194
TTAAGTC288650.011.10479894
GGAAGTC523500.07.236294394
TCTAAGT288500.06.923743294
AGAAGTC611950.06.55135294
ACTAAGT201700.06.408032494
GTAAGTC284600.06.4075994
GCTAAGT185300.06.15083792-93
ACAAGTC306600.06.00913394
GATAAGT195800.05.85699794
CCTAAGT233700.05.570817594
Produced by FastQC (version 0.11.5)