FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25203296
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT221050.09.497023120
CGTCGTG212350.09.43418120
AGCGTCG244700.09.314501120
GTCGTGT199300.09.209247120
TCGTGTA179600.09.117301120
AGAGCGT322850.09.010542120
GATCGGA508950.08.862428120
CGTGTAG179850.08.837825120
ATCGGAA482650.08.699127120
AAGAGCG370400.08.5825205120
GAGCGTC304350.08.25754120
TCGGAAG494700.08.159867120
AGATCGG559100.08.0889435120
CGGAAGA492250.07.774007120
TAGATCG97950.07.6544776120
AAGATCG221600.06.7126164120
GAGATCG270600.06.4723954120
CAGATCG226450.06.330464120
GTGTAGG239500.06.210923120
GTAGGGA233600.05.905613120
Produced by FastQC (version 0.11.5)