FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72073541
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG186450.069.80047694
GAAGTCG349850.032.8066394
CAAGTCG195050.028.79518194
AAAGTCG148350.023.12773794
CTAAGTC273100.018.22519194
ATAAGTC239250.015.65684394
TTAAGTC266750.011.96363694
ACTAAGT184350.07.419039292-93
GTAAGTC273800.07.415632294
AGAAGTC627650.07.128813794
GGAAGTC580900.07.09571394
TCTAAGT266350.06.970152494
GATAAGT184350.06.909139694
GCTAAGT190700.06.753014694
ACAAGTC320750.06.506001594
CCTAAGT228800.06.224212694
TGAAGTC637150.05.27426894
CATAAGT200100.05.214392794
Produced by FastQC (version 0.11.5)