FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49268136
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTCGG75350.040.9183894
CCGGCGA79550.032.2589574
CGGCGAG83050.031.1824235
ACCGCGT45150.030.1882616
CCGCGTT46550.029.9871127
GACCGCG48800.027.8340175
TCCGGCG93800.027.8091683
CGCGTTC50200.027.8067728
TTATCCG132450.026.24122414-15
ATCGCCG107100.024.66293346-47
CCGTTGA139750.024.5341718-19
CGCCGGA108350.024.31333748-49
AGCGACG82800.023.7838224-25
ATCCGTT150200.023.23402216-17
CGACCCG119900.021.99082682-83
CGACGAC94950.021.38388626-27
TTCCGGC127200.020.9135232
CGAGGGG114600.020.7931968
CCGGATC166150.020.60758450-51
GTCCGTT35800.020.4804461
Produced by FastQC (version 0.11.5)