FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71665022
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTCGG314300.058.57429594
TAAGTCG198750.036.7959894
GAAGTCG350950.019.08391894
CAAGTCG193650.018.78543994
AAAGTCG155300.015.97939594
CTAAGTC268500.011.93817694
ATAAGTC225700.09.6415694
TTAAGTC268750.08.18455994
GGAAGTC555450.05.322351594
GCTAAGT196700.05.089476694
AGAAGTC617950.05.06545994
Produced by FastQC (version 0.11.5)