FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71665022
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGTCGG377900.049.51230694
TAAGTCG194050.034.8776194
GAAGTCG392700.018.44334294
CAAGTCG220700.017.73946694
AAAGTCG175850.015.04748394
CTAAGTC263050.012.52499794
ATAAGTC215650.09.67679294
TTAAGTC253150.08.26190194
GTCGGAT92800.06.128233494
TCGGATC116350.05.93811894
AGAAGTC660200.05.01181594
Produced by FastQC (version 0.11.5)