FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18282409
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG38650.027.20541648-49
TCGTATG44250.026.70805244-45
CGTATGC41850.025.39251346-47
CTCGTAT43900.024.11956244-45
TCTCGTA51200.022.6140242-43
ATGCCGT57500.020.48118248-49
CGCACAT60750.019.4046936-37
ACGTCCG56100.018.98119432-33
CGTCCGC63250.018.73245232-33
GCCGTCT66550.017.87611850-51
ATCTCGT60650.017.70568342-43
TCCGCAC67500.017.55314434-35
GTCCGCA65450.016.4530534-35
TGCCGTC67800.016.04002450-51
CATCTCG78850.015.10247340-41
CCGTCTT72450.014.96907452-53
GTATGCC82450.014.74559346-47
CCGCACA76750.013.99152536-37
GTCACGT89100.013.36544128-29
CGTCTTC92500.013.12096452-53
Produced by FastQC (version 0.11.5)