FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006040667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21975277
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA269250.010.118071120
CACGTCT349200.09.983882120
ACACGTC357200.09.978667120
ACGTCTG311600.09.802072120
GCACACG462100.09.531421120
ATCGGAA871650.09.335016120
GATCGGA934100.09.237683120
CACACGT415800.09.178468120
TCGGAAG842600.09.008793120
CGGAAGA807750.08.922028120
AGATCGG1016950.08.449694120
GAGCACA678450.08.393555120
AGCACAC596950.07.9311576120
CAGATCG373200.07.798259120
AGAGCAC696200.07.748599120
TAGATCG164050.07.370481118-119
AAGATCG306100.07.351322120
GTCTGAA380400.07.1931953120
TCTGAAC358500.06.9463468120
AAGAGCA835150.06.836618118-119
Produced by FastQC (version 0.11.5)