FastQCFastQC Report
Wed 20 Apr 2022
EGAF00006040671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006040671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110053767
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAAAAAT1203550.07.00182341
CTGAAAT1056350.06.94025751
CTAAAAT741050.06.7392921
CGAAAAT132650.06.31031
CTTAAAT578400.06.2441051
CTCAAAT654850.06.10399771
CTAAAAC511400.05.9770921
CTGAGAT1049600.05.8872011
CTGAATT813800.05.8074521
CAAAAAC929050.05.8007321
AAATCCA961350.05.7536194
TGAAATC776250.05.7222642
CTGAAAC865350.05.68973641
CTGATTT934550.05.6760191
AAAATCC791250.05.64345363
CTGGAAT1043550.05.62841941
GGAAAAT1113850.05.54338841
AATCTAG300700.05.5277355
GAAAATC770550.05.4355362
AAAAATT1841450.05.4261282
Produced by FastQC (version 0.11.5)